Sample 3300017228

Overview

Basic Information
IMG/M Taxon OID	3300017228 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211908 \| Ga0186196
Sample Name	Metatranscriptome of marine eukaryotic communities from unknown location in CHM medium, at 25 C, 0 psu salinity and 642 ?mol photons light - Cryptomonas paramecium CCAP 977/2A (MMETSP0038_2)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	38677207
Sequencing Scaffolds	16
Novel Protein Genes	16
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	13
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F012351	Metagenome / Metatranscriptome	281	Y
F020015	Metagenome / Metatranscriptome	226	N
F021541	Metagenome / Metatranscriptome	218	N
F025760	Metagenome / Metatranscriptome	200	Y
F026478	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F036560	Metagenome / Metatranscriptome	169	N
F084315	Metagenome / Metatranscriptome	112	N
F087277	Metagenome / Metatranscriptome	110	N
F101269	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

F010032

Metagenome / Metatranscriptome

309

F012351

Metagenome / Metatranscriptome

281

F020015

Metagenome / Metatranscriptome

226

F021541

Metagenome / Metatranscriptome

218

F025760

Metagenome / Metatranscriptome

200

F026478

Metagenome / Metatranscriptome

197

F032673

Metagenome / Metatranscriptome

179

F036560

Metagenome / Metatranscriptome

169

F084315

Metagenome / Metatranscriptome

112

F087277

Metagenome / Metatranscriptome

110

F101269

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186196_102213	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2070	Open in IMG/M
Ga0186196_104360	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1552	Open in IMG/M
Ga0186196_104641	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1506	Open in IMG/M
Ga0186196_107082	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1230	Open in IMG/M
Ga0186196_108965	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1089	Open in IMG/M
Ga0186196_109352	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1065	Open in IMG/M
Ga0186196_112296	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	909	Open in IMG/M
Ga0186196_112366	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	906	Open in IMG/M
Ga0186196_114520	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	824	Open in IMG/M
Ga0186196_116278	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	766	Open in IMG/M
Ga0186196_120271	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	658	Open in IMG/M
Ga0186196_121027	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	639	Open in IMG/M
Ga0186196_123085	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	593	Open in IMG/M
Ga0186196_123904	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	574	Open in IMG/M
Ga0186196_123986	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	572	Open in IMG/M
Ga0186196_125865	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	533	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186196_102213

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

2070

Open in IMG/M

Ga0186196_104360

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

1552

Open in IMG/M

Ga0186196_104641

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

1506

Open in IMG/M

Ga0186196_107082

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

1230

Open in IMG/M

Ga0186196_108965

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712

1089

Open in IMG/M

Ga0186196_109352

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

1065

Open in IMG/M

Ga0186196_112296

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

909

Open in IMG/M

Ga0186196_112366

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales

906

Open in IMG/M

Ga0186196_114520

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

824

Open in IMG/M

Ga0186196_116278

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

766

Open in IMG/M

Ga0186196_120271

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

658

Open in IMG/M

Ga0186196_121027

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

639

Open in IMG/M

Ga0186196_123085

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

593

Open in IMG/M

Ga0186196_123904

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

574

Open in IMG/M

Ga0186196_123986

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

572

Open in IMG/M

Ga0186196_125865

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

533

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186196_102213	Ga0186196_1022132	F084315	MRPSIMISVAAVGLLCVIIAAVSIQMSNRDNAAPSELMTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNIRHLVKLGRMAGGEYRDPHFLESFASQTFRDLSESCCTAMLVAPMKHNMPIWNSYSNVAQRLRNYIANGNHLIFTGGSLVSMEFINTYFWYNIEPTSGEAGYWDDTGYGNWSPGPFRKLVDKNLPWVFKMTPDTLYQDHTSVQSVLLASLPDGARVLYMSPKSSPVFQIRFCQRLSDKHGEAPIKTLPRDCYRYAAKGYPCSCGTITYIGYDWHMDQTSEAWDKVCFATRLTTHLTLSLPRLPLFTIPLGSVSPGYDRPFCS
Ga0186196_104360	Ga0186196_1043602	F010032	VSSSSRLVNTLVASALLACVGVVVWYSQENQSTDLFQSSALDTQQTTELSFLQTSAFVDQVYMYAGLAVDNKHETGFIAKEIRKHNYQTVIRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVIFLGNYVSVQFMNDVYGFQLMDDYQNGPYYRNDRNVRNTPYQFLPSRIEQASIETYAVNTRSIPPGGKSMLDTLGATVAFVVRYDLGTVCWIGYNYNTPFHADQWTRVLHAAIDM
Ga0186196_104641	Ga0186196_1046412	F021541	MCLSLNLLSFQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186196_107082	Ga0186196_1070821	F084315	MRPSIMISVAAVGLLCVIIAAVSIQMSNRDNAAPSELMTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNIRHLVKLGRMAGGEYRDPHFLESFASQTFRDLSESCCTAMLVAPMKHNMPIWNSYSNVAQRLRNYIANGNHLIFTGGSLVSMEFINTYFWYNIEPTSGEAGYWDDTGYGNWSPGPFRKLVDKNLPWVFKMTPDTLYQDHTSVQSVLLASLPDGARVLYMSPKSSPVFQIRFCQRLSDKHGEAPIKTLPRDCYRYAAKGYPCSCGTITYIGYDWHMDQTSEAWDKVMLAAVEFQADSEVSATKSPNCYEPPKKVIDTTEPLPPPKCN
Ga0186196_108965	Ga0186196_1089651	F021541	VVFCELTFCFVSEMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186196_109352	Ga0186196_1093521	F032673	QGQVTLHKMVVVVDYGAVPVEHEKNEISASSPRKSNRAIFAVVASIAAFALVAMVYQVSMEDDGRATLAALKAQEINDILSKAKHMSTSQLQAEVDALEALKVKRVRTTSLSEDTEANPMGGILENVPATIVAPVPGPPDFNGVSAVVARLPNIGFAPSMLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNLRCTIRGYRNLMGDFTGNTIYTGFKLTFTGKSQIHTSHIPRGIQGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186196_112296	Ga0186196_1122961	F020015	MTAGSKGGHNQSFAKRVFLASTVAVAVLCLGVLVVERDDDLMGSALGISYYAVTKPPAFNFNRFIENVWIYDGRSASRDEEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSQDIHCIIFPPLSHFPGIGELAKKDLRGYVSAGNNIVFVGSYEWLSIMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMSRLEQPDGSIYSVKVDSIPMEGACMFDTMGACVVFFTKYNLGTIVYIAFAYDTPYGIGHWDQILHAAMMM
Ga0186196_112366	Ga0186196_1123661	F036560	LRADVLLSWQVFETLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186196_114520	Ga0186196_1145201	F087277	DGEVRRLRTAFFAVASAAAIFAVVICVLSSSSNSNTNGPISASSERWLESGRSSIDMFHVARSPMQKYELRGDPLPHQVHYYSNIGDRLPVLADEERETRQTFQELVQLGHTCVVLMRRAIWSVDPTVFEPQYDLQVRLDSIHTGLKQLAAQTGVYLTNPPVVQVDESVFDEAADDISRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKISSQLTELVNIARHRFLEVADSIDSMRVNIETIHDDRRRR
Ga0186196_116278	Ga0186196_1162781	F025760	MTLSRYRYDTRLGGNWYKADEPWGAYLQTEGNPAVTIHPYENDPSSGSFNPQAATTWTPVDWGSWPNYNVHGYGIY
Ga0186196_120271	Ga0186196_1202711	F026478	VKSEDAMKGRTFPLLLLSNIVLCFLLLCCDAKPKRKQVSVNDEDVIKAKEFALAEIIKLTDSYRDMKINKVISAETARSAFADGTNYFLKLELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEDDAAADEADAAEAAKDEL
Ga0186196_121027	Ga0186196_1210271	F101269	SPSKMLRNQIEEQLFCIAAGKPGGGTFLPHCFPDKKAAQGTAKINGWGPFFANDSQGYIAYGVGNWDGQGSGHNFAADVWHPSHGYINNCDGGRSHWACDYRQA
Ga0186196_123085	Ga0186196_1230851	F025760	MMFLVPLSALRNDPYSMFDTKASGNWYKADEPWGAFLQTDGNPAVSIHPYENDASSGSFNPQAQTTWVPVDWGSWPNYNVHGYGIY
Ga0186196_123904	Ga0186196_1239041	F025760	APQGSSALYQSASKMMIVPLASMLYPSPNGGRNDPYSMYDTRLGGNWYKADEPWGAYLQTEGNPAVTIHPYENDPSSGSFNPQAATTWTPVDWGSWPNYNVHGYGIY
Ga0186196_123986	Ga0186196_1239861	F032673	QVDEGAVTLAAMNAQEMQDLMSKAKHMSTAQLQQAVNMLEKDAKLNSVRTTSLVASEDTEANPSGAVLEKVPSTIVAPVPGPPDFNGASAVVARLPNIGFAPSLLEEKGFETRGTFTVRQSRAGESFYLRIYGKLNHNMRCTIRGYRNLMGDFTGNTIYTGFKLTYTGKSQIQTGHIPRGITGEFDIMTC
Ga0186196_125865	Ga0186196_1258651	F012351	RRDTETEMFADLHHLHHVMSALEQGGSVSAASTVSGTAAGSADIYFGAEHINADNVAQNWLSDDQVSNMAAGVNGPVDRNEGMYNGYTAVKTYWSDTIVMDNLRGGDATGLATPGAQEVTSTAAGVSGTGNTVHSYSGDTFY

Scaffold ID

Protein ID

Family

Sequence

Ga0186196_102213

Ga0186196_1022132

F084315

MRPSIMISVAAVGLLCVIIAAVSIQMSNRDNAAPSELMTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNIRHLVKLGRMAGGEYRDPHFLESFASQTFRDLSESCCTAMLVAPMKHNMPIWNSYSNVAQRLRNYIANGNHLIFTGGSLVSMEFINTYFWYNIEPTSGEAGYWDDTGYGNWSPGPFRKLVDKNLPWVFKMTPDTLYQDHTSVQSVLLASLPDGARVLYMSPKSSPVFQIRFCQRLSDKHGEAPIKTLPRDCYRYAAKGYPCSCGTITYIGYDWHMDQTSEAWDKVCFATRLTTHLTLSLPRLPLFTIPLGSVSPGYDRPFCS

Ga0186196_104360

Ga0186196_1043602

F010032

VSSSSRLVNTLVASALLACVGVVVWYSQENQSTDLFQSSALDTQQTTELSFLQTSAFVDQVYMYAGLAVDNKHETGFIAKEIRKHNYQTVIRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVIFLGNYVSVQFMNDVYGFQLMDDYQNGPYYRNDRNVRNTPYQFLPSRIEQASIETYAVNTRSIPPGGKSMLDTLGATVAFVVRYDLGTVCWIGYNYNTPFHADQWTRVLHAAIDM

Ga0186196_104641

Ga0186196_1046412

F021541

MCLSLNLLSFQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS

Ga0186196_107082

Ga0186196_1070821

F084315

MRPSIMISVAAVGLLCVIIAAVSIQMSNRDNAAPSELMTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNIRHLVKLGRMAGGEYRDPHFLESFASQTFRDLSESCCTAMLVAPMKHNMPIWNSYSNVAQRLRNYIANGNHLIFTGGSLVSMEFINTYFWYNIEPTSGEAGYWDDTGYGNWSPGPFRKLVDKNLPWVFKMTPDTLYQDHTSVQSVLLASLPDGARVLYMSPKSSPVFQIRFCQRLSDKHGEAPIKTLPRDCYRYAAKGYPCSCGTITYIGYDWHMDQTSEAWDKVMLAAVEFQADSEVSATKSPNCYEPPKKVIDTTEPLPPPKCN

Ga0186196_108965

Ga0186196_1089651

F021541

VVFCELTFCFVSEMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS

Ga0186196_109352

Ga0186196_1093521

F032673

QGQVTLHKMVVVVDYGAVPVEHEKNEISASSPRKSNRAIFAVVASIAAFALVAMVYQVSMEDDGRATLAALKAQEINDILSKAKHMSTSQLQAEVDALEALKVKRVRTTSLSEDTEANPMGGILENVPATIVAPVPGPPDFNGVSAVVARLPNIGFAPSMLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNLRCTIRGYRNLMGDFTGNTIYTGFKLTFTGKSQIHTSHIPRGIQGEFDIMTCRDLGNGEVQYFRIRYD

Ga0186196_112296

Ga0186196_1122961

F020015

MTAGSKGGHNQSFAKRVFLASTVAVAVLCLGVLVVERDDDLMGSALGISYYAVTKPPAFNFNRFIENVWIYDGRSASRDEEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSQDIHCIIFPPLSHFPGIGELAKKDLRGYVSAGNNIVFVGSYEWLSIMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMSRLEQPDGSIYSVKVDSIPMEGACMFDTMGACVVFFTKYNLGTIVYIAFAYDTPYGIGHWDQILHAAMMM

Ga0186196_112366

Ga0186196_1123661

F036560

LRADVLLSWQVFETLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK

Ga0186196_114520

Ga0186196_1145201

F087277

DGEVRRLRTAFFAVASAAAIFAVVICVLSSSSNSNTNGPISASSERWLESGRSSIDMFHVARSPMQKYELRGDPLPHQVHYYSNIGDRLPVLADEERETRQTFQELVQLGHTCVVLMRRAIWSVDPTVFEPQYDLQVRLDSIHTGLKQLAAQTGVYLTNPPVVQVDESVFDEAADDISRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKISSQLTELVNIARHRFLEVADSIDSMRVNIETIHDDRRRR

Ga0186196_116278

Ga0186196_1162781

F025760

MTLSRYRYDTRLGGNWYKADEPWGAYLQTEGNPAVTIHPYENDPSSGSFNPQAATTWTPVDWGSWPNYNVHGYGIY

Ga0186196_120271

Ga0186196_1202711

F026478

VKSEDAMKGRTFPLLLLSNIVLCFLLLCCDAKPKRKQVSVNDEDVIKAKEFALAEIIKLTDSYRDMKINKVISAETARSAFADGTNYFLKLELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEDDAAADEADAAEAAKDEL

Ga0186196_121027

Ga0186196_1210271

F101269

SPSKMLRNQIEEQLFCIAAGKPGGGTFLPHCFPDKKAAQGTAKINGWGPFFANDSQGYIAYGVGNWDGQGSGHNFAADVWHPSHGYINNCDGGRSHWACDYRQA

Ga0186196_123085

Ga0186196_1230851

F025760

MMFLVPLSALRNDPYSMFDTKASGNWYKADEPWGAFLQTDGNPAVSIHPYENDASSGSFNPQAQTTWVPVDWGSWPNYNVHGYGIY

Ga0186196_123904

Ga0186196_1239041

F025760

APQGSSALYQSASKMMIVPLASMLYPSPNGGRNDPYSMYDTRLGGNWYKADEPWGAYLQTEGNPAVTIHPYENDPSSGSFNPQAATTWTPVDWGSWPNYNVHGYGIY

Ga0186196_123986

Ga0186196_1239861

F032673

QVDEGAVTLAAMNAQEMQDLMSKAKHMSTAQLQQAVNMLEKDAKLNSVRTTSLVASEDTEANPSGAVLEKVPSTIVAPVPGPPDFNGASAVVARLPNIGFAPSLLEEKGFETRGTFTVRQSRAGESFYLRIYGKLNHNMRCTIRGYRNLMGDFTGNTIYTGFKLTYTGKSQIQTGHIPRGITGEFDIMTC

Ga0186196_125865

Ga0186196_1258651

F012351

RRDTETEMFADLHHLHHVMSALEQGGSVSAASTVSGTAAGSADIYFGAEHINADNVAQNWLSDDQVSNMAAGVNGPVDRNEGMYNGYTAVKTYWSDTIVMDNLRGGDATGLATPGAQEVTSTAAGVSGTGNTVHSYSGDTFY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017228: Metatranscriptome of marine eukaryotic communities from unknown location in CHM medium, at 25 C, 0 psu salinity and 642 ?mol photons light - Cryptomonas paramecium CCAP 977/2A (MMETSP0038_2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences