3300017226: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 624 ?mol photons light - Symbiodinium sp. Mp (MMETSP1125)

Overview

Basic Information

• IMG/M Taxon OID: 3300017226
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212022 | Ga0186310
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 624 ?mol photons light - Symbiodinium sp. Mp (MMETSP1125)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44479157
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	7
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	1
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000241	Metagenome / Metatranscriptome	1481	Y
F001154	Metatranscriptome	763	Y
F013530	Metagenome / Metatranscriptome	270	Y
F016002	Metatranscriptome	250	Y
F022654	Metatranscriptome	213	Y
F034936	Metagenome / Metatranscriptome	173	Y
F036711	Metagenome / Metatranscriptome	169	Y
F039474	Metatranscriptome	163	Y
F043414	Metagenome / Metatranscriptome	156	Y
F048097	Metatranscriptome	148	Y
F062433	Metatranscriptome	130	Y
F064392	Metatranscriptome	128	Y
F067800	Metagenome / Metatranscriptome	125	Y
F071919	Metatranscriptome	121	Y
F074901	Metatranscriptome	119	N
F083686	Metagenome / Metatranscriptome	112	Y
F096614	Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186310_107456	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1535
Ga0186310_108383	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1464
Ga0186310_113923	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1139
Ga0186310_117588	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	969
Ga0186310_118055	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	947
Ga0186310_118292	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	937
Ga0186310_118688	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	920
Ga0186310_118968	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	908
Ga0186310_119782	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	873
Ga0186310_121479	All Organisms → cellular organisms → Eukaryota → Sar	807
Ga0186310_123860	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	718
Ga0186310_124542	All Organisms → cellular organisms → Eukaryota → Sar	694
Ga0186310_125733	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	651
Ga0186310_127192	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	601
Ga0186310_127679	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	585
Ga0186310_127902	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	578
Ga0186310_128794	All Organisms → cellular organisms → Eukaryota → Sar	550
Ga0186310_129389	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186310_107456	Ga0186310_1074561	F043414	AVLEEEEGGCSPWTMAKAMKTMKAKKPVRKVITSKAIKSTKAAPAAVGNFKIRIGIIHGKVFDPIKVGTHDRQYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHVDFMTMEQVTEKRLARNHLTFNFWGDMSIALMNEKPKLARRLQKIQSNPNTRHHPAWDYYEWILHKSRYMKACERQGIPMIDTIHVEKGFNAREVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGNVFDEIRNFFVDGEWAYSVYTDGVDYEGFWEQPAGKLKEACKALAIRTMEEVKKVHKWEGKRINSLLNRIDIGVIPDKSKKLGYHIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQASEMLKRSLAAKRKMPSPQKVRQLLAVLDERLAK
Ga0186310_108383	Ga0186310_1083832	F064392	QKRADLGLGLLPRRMAEPDDPLIVNVVGRHKERENQDLQGEYHMIGMVHGRPAYRKPGTRTVIRYWPVADRWLIDREGVQESDICNAYAEQGGARHPAVEELVWRVWESQHRQHVRDPEFLVTASPNTIQVLGRAAGKENWALNGEYKLIGLHQGKVAYQKAGKFKHAIRYWRVGDRWLIDLEGLRDVDICNAYADAQSTSYPGEIRLQWHIWDSTRQRHVLDSSLCTLVTPSVIEVVGRESPKENTAMNGSYHLVGLHAGQPAYMKADGSGHAIRYWPREERWLIDLDGLRDTEICNAYAEAGGTGAHMHPGHLNLVWHVWETSRGRHLTDPAVRSFVAPHFVRISGRDPYKENSTINGDYELVKIVEGKPAYKKADQDHVIRFWPAEERWIIDLEAGFHGGDVANSFADAKGADHPGNSELLFYVWETSRGRHVPDEDVIADAIWLPPVDWSKVPGVSD
Ga0186310_113923	Ga0186310_1139231	F083686	LIRFSRTTIRYCETMAAYHAQQLETLVACGCNCFSSVGMLLFNKLAVQAFPLECSLVAMQLLFAAVAMLIFGFPYLHIGSFRDFLRWCIVVPCFCGMLLTSILALKSAPMSLVIVLRSAAPLCALVIERFYPEPLRISQSMIFSIVLMMAGAVMYVSQLHSDHWEGIGWVLLNSVVAVCDRLLQRLLLSKDQQPVDISKTGITVINNLVGLIPVALAAYVKGEVAQLPGAYAALSTMDTVYIGLSCVIGLSIGYTGIWAQSLISATSFLVMINANKFVIIGIEAFGMHSKVLTTAQLLGACLSILGGIWYGKARQQMEQEEEERKQLIAPKMV
Ga0186310_117588	Ga0186310_1175881	F016002	MSLLTPRLDWILGCCTAGGCESHAQTEFQVQLSSEPAPAHSAKHLLTSGDSFDITFTPRLFASHGFSRASNAPITPRQHDLKAQLDLPSLQTYPLPPNLSADDGEEVRKEKLLEMYREFALDLHTGMYLTQLTSNRDYADIHVQLMEDLTTLKLDQSNGRIIEFPLTNVSKVYRIVKNDDKWYAAGTPLPHASPNAEQIVVVEFMRRKLAFVFKELQVSQRFLICMELLIRRAQQKQALRSLTPTFPPHHSQSRQCPTPRVVQEAMTRPIPTPSENGANAK
Ga0186310_118055	Ga0186310_1180551	F074901	PVGLRQKTLRRSCVLLLIFPLLAMATSAPLLAKEGKGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVVGYCAALACFPEYWWTCTLCFGIPFSYIAIQNIYIDHDVMHGATFPVYDFQRYLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGANWYKYLLTAPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRR
Ga0186310_118292	Ga0186310_1182921	F074901	LKVVWAHCVFQGSCQALVVMVSRAPLLATEGKTGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVLGYCAALACFPEYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPVYDFQRYLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGANWYKYLLTAPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRR
Ga0186310_118688	Ga0186310_1186881	F074901	HSGGVWCFLFLPLAMATSAPLLAKEGKGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVLGYCAALACFPEYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPVYDFQRYLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGANWYKYLLTAPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRR
Ga0186310_118968	Ga0186310_1189681	F048097	LKIQAAVEGTVLFHLKVEAMAHGNLSDLVFLALLAISVQLLAFPGTLFEDLGPLKAQFKTKSSDLDAILKFAGVLILFMGMTFSAVSWNPINGKMAGFGAFITMGYTVYSSFTADGAFIPRALYAYALVILVGALHIFLFPSNPLPPKTPEVKNNHGNFSDVVALCLIGASLTGYFYPEHLFQEIGPLRAQFSVKSDDLMTMIKFVSGLMLIMALMLSGVKWNPINGKLSGLGGFIAAGYTAYSTYVADSEVFVPKLFYAYAAVLFLGALHIFAFPSNPSLPKPAKKKE
Ga0186310_119782	Ga0186310_1197822	F096614	VLKAMRALGEGRSFFSEGMLQSIADLLFNVLSYLRAPSLSKLLYSSHEAELWVRMYLPALVDKRGWGNPDLSANPLSTLHLSEMWDVLANVCSPIGVHFMLLRHTFYGTMLELQLSPGSTLAHFNFRASDEAAPMWCRGSFAVRGALQCGKWTDELRQRPRGAPITQASLAQQSSYRVEHCGDRFVLRPACKRWTEARPQLQLTNRGFIAIAAEGGGIIVEDGQPARRIEADAPEAPC
Ga0186310_121479	Ga0186310_1214791	F022654	LAMSDLTEDLDRAETCPSCLAKGGGWCSTSQRCVEDDTAYCEAESLIGLAGFTDDCGMDEEGQKPKVRPWIDKGVLVSYTFENGSCCMGQGIVHRAYHVLEEYTVLLRDGSREEVKTERWNHRKPAKKKDENSEYHNIEFRYFSPRELTVLSGVRSGDLVEAHFAVKQKGEAQHELIKSRRTELAVVINTTVTNIAVNFTTDHIVSILPRDFIVDVTNQTLGPGHARHTEL
Ga0186310_123302	Ga0186310_1233021	F000241	LKRFTQVATWLLGFLNRIALAMARPTLLPAVAALAAVYSIASFCFVGVAQTPRDCSRVPARVSAEYLERCGPKDSDVPFDAMQASGPGASVEFKKRPFGILRYQPGQGMKGAMAMEIIPKSRYPGDPQGQAFAAGIQSGWVVQSINGQNVQGEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEPPMTVVFSSIPGYVYKGAALTEDGQDGFAR
Ga0186310_123860	Ga0186310_1238601	F062433	AEELLGRAAEEFQALLTLVANLRQAAEGARPESLGPDRAKPVPKPPFCWQPSQEYEKEFQVTGEHNEFVTKVGDFEDQGWVIPVGGSWRLTRGGIYRWTIRIERKCTSRPQLQLGIHGANHNQPWRLVTTSRCSWSRDDEPWQDRPGGDRLIEEGSYVHMEVDMRGVSSKTGTFAMAINDEPFEQLFDDIPLGQPYALIPVVSMGGNQSQIRLCPNY
Ga0186310_124542	Ga0186310_1245421	F039474	RSLQPQLAQSTFASAVSLAFPGAMLTSVRRIALRRSLGVRAVAGHGQPMRRQSFGFGDPFPPNAPGVGGEHQLYPPETMANTAKYITENMTNVPKYKEIIEGIGYPGQKHSAGGLCTLGRIYYGPGRYDYGRPKMPKGWLANYFYPIWEFGHIFFVCDRWIAWRLLRHILALTICYIPFNIQMHWNKEMIEDYKKHHEW
Ga0186310_125733	Ga0186310_1257331	F034936	LVPHEGRASNPFFRQASIANMQKSQSEGSLAFLKNSKVGSATGFMLVSGGIMAIPHGKKSKGLLDFAARFTAVSEYQEKFREIPHCYASMDRKPLAPYNPNATRSRLALEDAPVPLKNASTIEFRDKFCVHKRRFVTTHKNYYTGERPDMRSNPGMIADSTRLKKKLQDM
Ga0186310_127192	Ga0186310_1271921	F001154	RLKLFSHFRAAPGRGPFTDGMVKVTVGKPEDPWCEIDLTEEDVEDWKKGVDIAEEKLKEVIQLPPITLDNCHEREDGDLQWDEITFEEEVNGKYWHAVIMSLHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0186310_127679	Ga0186310_1276791	F071919	SSCLLLRPVTTRGVRMEKEEKVQQYKTIKRMQKTFLVRCNESLTHIIPGNGVKPASAIRRIEQQLKDERHRLGKLNQEELMAQMDVTSQKKVKNAQELAAKKAELIEHIKQLEKQLLQYELL
Ga0186310_127902	Ga0186310_1279021	F036711	MPVWQNINLKQKAVFEIIQAPHARELPYYLKDDELDFFIKGIAWGPHKDTYLPRLVERHKRPIYIARGYAPPTYSRLVMVRFYGPDPLLQGHAGWDAGEEGEIMEYILGWRWLYADWPGPLVDEVEEAWKTQWWPQMSRPDWTWEGLRFCVPPYFVAEEGRPWR
Ga0186310_128794	Ga0186310_1287941	F013530	ATVMSEEMSIKSKTIRRLEVGEVLEALEGPIVEEATKVKRLRCLATQDDCSGWVTLAGNQGTAFLEAGGNFYTCVKETLITDALCVQESKTIRRLAKGEVVEVLEFQKKDATADVRRIKGKAKQDGAVGWITIASNAGTAFLEPC
Ga0186310_129389	Ga0186310_1293892	F067800	DCLGSSGSSPAAPCPVPSPAMDKVMPVVGGLAGLWVASKVVPIMYRWELIPGVGSEEWWARAKTIRYDHYTEGIVYSPYDTGEPIREMPEECKGKMLLRQRRGGWKLQSEMEQE