3300017222: Metatranscriptome of coastal eukaryotic communities from North Atlantic Ocean in L1 medium, 22 C, 32 psu salinity and 705 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0259)

Overview

Basic Information

• IMG/M Taxon OID: 3300017222
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212391 | Ga0186679
• Sample Name: Metatranscriptome of coastal eukaryotic communities from North Atlantic Ocean in L1 medium, 22 C, 32 psu salinity and 705 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0259)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53693460
• Sequencing Scaffolds: 8
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.56
  • Long. (^o): -70.583
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000007	Metagenome / Metatranscriptome	8691	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F000342	Metatranscriptome	1262	Y
F001154	Metatranscriptome	763	Y
F001767	Metagenome / Metatranscriptome	638	Y
F009535	Metagenome / Metatranscriptome	316	Y
F015603	Metagenome / Metatranscriptome	253	Y
F022654	Metatranscriptome	213	Y
F064389	Metagenome / Metatranscriptome	128	Y
F071919	Metatranscriptome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186679_109616	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1685
Ga0186679_113685	Not Available	1381
Ga0186679_113961	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1365
Ga0186679_119285	All Organisms → cellular organisms → Eukaryota → Sar	1052
Ga0186679_123794	All Organisms → cellular organisms → Eukaryota → Sar	833
Ga0186679_124177	All Organisms → cellular organisms → Eukaryota → Sar	816
Ga0186679_130283	All Organisms → cellular organisms → Eukaryota → Sar	547
Ga0186679_131261	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186679_109616	Ga0186679_1096161	F001767	MALQEPLQGYKKLSSGSGRGKVSIFYGADEYLDELRKKFENDPEIAAMKGILPDEGDPNAAKVQSNSKMLSVQKNSENRSHKTGRLFPTPNKPDPMPAELAFLFTKITPEQMMYMWNILTLIFVSQCMMIIAYCAALACFPAYFWTCTITFGVPFAYLAIQHIYVDHDVMHGATFPPYSWQKYLTHPFSDFISLPWEEFVLEHNRHHASTVDLLQQGEFGWDPEEFQYWMLEWTWRHRQYPFPIHPFGLLLTGCMVPVIHFFGLNDTGSLFALEWYFHFPDAGAGGKCNKEFWKKWVPRRCLHTAFVWSLWACVWLLGTWPLGRPLSEGWRFLLPVTCCARIGYSAAWMFITNFTHSHPWNKFLATDPERTWPVLHETMAFVLGGKHRWNEMLFHDLHHAFPNAVGTLSQRGRFHGWRKVHDAALEVLHRGLWKANGDEETEMQKTQRKRSLLMKQNMAK
Ga0186679_113685	Ga0186679_1136851	F015603	VYRDIRADETHRFSYLNTNVTTMDQPDQYRKLVINLEPCRGVVYLFVRKTRPCYPNPYSCVADRLTGECDWTHFMSEIDGSRDATPTFFEVPLSSTKYFISVYAKETASYTLMLLADIGALPRPGNRGRIEATQLGELQVQLNWNVGYFLPTGVSDMRTYWVYSALLIEEDERSNAAVFLNSNKIMNTVCGLHNNTDREYSKIEPTACFNGMCNATIDGVITNRRYVFNIVAESQRGYQMAYAGLIMRTEWEVIRQATSDRTLKVVGAVSGSVLGMVVIIYFLMLKLYA
Ga0186679_113961	Ga0186679_1139611	F064389	SIRQQGLCSDRLWRMVVQRVSFLDFPWVLDHILATRFNGSLKQVRRAVCSVVLTLRAILSAAVELGILVVQEGESQPDGPVCAKPFIDNMIHVITECLQNYPLCMDSEFFHSFLEPLPGHLRCLVGNFHPLTHMQFEDVAKQKAFEAQTKAITQALSDLPSQCSNLEWYMNSQEPVLKQIQFIKENLRAPLWMLMHEFRCLQAEEKMLVEDVREAVRAVTELQEQEGGGYSSWPQVMGETLLLLLPLWQLSALAVAKGQEALMRFFTQPPMAVSHSAQRLLQHLIEVLLSEKADMVDIVLWFATEPASASLLSSVEVVEYLLPEASDSEEFAHFGKFGQLRVQENAAELQAHILRLPQTTRALVSVHWRKVIEEVHLYLQLYLRVIRTFLEVQKEVRTYVQEHLFVEVLIGLPRIQSSDAVTRAFKELSSAAPGRA
Ga0186679_119285	Ga0186679_1192851	F000342	QVSGPRKTAHLMKPPMSASRPGMGRAMSPPFSGPRADDGAVAVPDYAATSGGGGIFTPGKRRRMNVQAICLNIFMPWFLFCTLYGIMSFSFHYQHPFLAWFMVLLGLGLVFASAFMAYRARKRDRDPMWFNFATMAFFIAVILAAIFGDMNFWYNMQPFYDVENLNTYPSVNPAREKGQQLMDAGRVYFADGTALDMRKAMGFKNLDLYCVAPIVSGEDQLASYDFWAVGMNCCSGVSSDFRCGEFNNPHARSGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAEMNSYRDDGFKYYLLGIFTHFAFNLFCVMCAVVGFSKIGRY
Ga0186679_123297	Ga0186679_1232972	F000241	MAVRRPVLCMLLLAVVASQMGSWLFVGSPATQTQRGSRVAAHVAAGYLERLGPKDTDEPFTAASAQPGAEVEFKKRPFGILRYQPGQGGMGAMAMEIIPTSRYPGDPQGQAFAAGITGGMVVTSINGLPMTGEPFGKIMDLLDDEVADPRFSKSTALALEQQGRAAEPLELPIKVTFGSIPGYVYKGKELTADGQDGFAR
Ga0186679_123794	Ga0186679_1237941	F009535	KNLFGHKCGLRVTSQLDLTAMARRSSSTLSVLAVAALALLSCHFFTFAFCGIPSAAESRGQKVVRFVGVDYLLRNGPKDADPPLINPAAAAGPAHEITFNKRPFGIARYAPGASGTGAVVMEVTPVSRYPGDPQGQAFVAGVQPTWVVKSVNGMDVTNVPFEAIMETLDDEVLDPVAALSLNLKESGTVTDFKESTSADKSYGPVGEGTFKFGGGEVAELPITITYQEQR
Ga0186679_124177	Ga0186679_1241771	F022654	MVCSWSCVAIWFFFAAAYDPHGLEELPTRELGQEHLDDDTCETCLSKGGGWCTIEGRCVEDDASHCDLDHLIGLAGFSNDCGKDPTKTQKKRRDVLEKGVLVSYVYETGACCMGIGVIHRAYKVLEEYTVLLRDGSKEEVKTERWNNRKPPKKSDENSEYHNMEFRYFKPHELTVVSSIRPGDSVQTHFAVKHKGDPAELIMSQRVEEAVVINTSITTVAVNFTSDHIVSIVPRHFVIDPTNNTARKEPIHDEL
Ga0186679_125114	Ga0186679_1251141	F000241	MASRRPIIAMLLLAIAASEIGSWLFVGTPSTTLLRGSRVAARVSAGYLERLGPKDTDEPFNAASAQPGPEVEFKKRPFGILRYQPGQGGMGAMAMEIIPTSRYPGDPQGQAFAAGIKGGMVVTSINGMPMTGEPFGKIMDLLDDEVADPRFSKSTALALEQQGRMAEPLELPTKVTFGSIPGYVYKGKELTADGQDGFAR
Ga0186679_128208	Ga0186679_1282081	F000007	RGRIGSEAFCSVRLHLHPGQMKMSMKSVISFILVGLALEAHMAVSVVARAPEDDLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH
Ga0186679_128738	Ga0186679_1287381	F000007	LCGSAGLLQLSWPLPSKAMKIAMKSCIAALLLAFEAHQVCSILARAPEDDLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH
Ga0186679_130283	Ga0186679_1302831	F001154	SRRQREILHPYPKSPPLWALQTMVRVTIGRTEDPWCEIQLEAEDVDDWKKSVEITEEKVKEVLQLPPITTENCLEREDGDLQWDEITFDEEVNGSYWHAVIMALHNIREEFIKKQKQMKQLDYFLHVKETSDKRGSNYYV
Ga0186679_131261	Ga0186679_1312611	F071919	FGSSHFGSHGSKPIGFLFRLPLERPAMDKEEKSVLQYKTIKRLQKNYLVRCNESLTNVIPGNGVKPVSEIRRLEKRISEKRAELGSLTEQELMSQMDNSSQKKTAKSTQELAQRRIELTETIKQLEKELLEKELL