3300017220: Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 615 ?mol photons light - Goniomonas pacifica CCMP 1869 (MMETSP0107_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017220
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211845 | Ga0186133
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 615 ?mol photons light - Goniomonas pacifica CCMP 1869 (MMETSP0107_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38848367
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	3
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005668	Metagenome / Metatranscriptome	393	Y
F026197	Metagenome / Metatranscriptome	198	Y
F026478	Metagenome / Metatranscriptome	197	Y
F036560	Metagenome / Metatranscriptome	169	N
F086665	Metagenome / Metatranscriptome	110	N
F092088	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186133_111863	All Organisms → cellular organisms → Eukaryota	1085
Ga0186133_113453	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1010
Ga0186133_123714	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	619
Ga0186133_125212	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	573
Ga0186133_125723	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	558
Ga0186133_126532	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186133_111863	Ga0186133_1118631	F026197	SSMQSQWLLSLVLIGSAAALPTLVDEATMCRGGHCDDLDMQYKRVSVSQPGFQWDDAGGYCGSWASQRAFLTKGAWISQQQVRDHTKPCGGHDSEILSCNIDEAWTNLKIDYEGFDYKSTPLPQTAAYAKWLKKQLAAGHAVAWMILWSGQDYPIYDLTPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVLHYNDAGVKTIHRAISSLAGKWAGPGQPADCGEYSYCISNPYGFGWAIKGFKDGNSSRAAPASLHVEPWLSEPDTRSGKAPEALKGKVTATELTAGSTYDIYRWDTVAQAFTYDAQFKKASFTATSDTYEYTDDESFMSNGTTYYRVVLAE
Ga0186133_113453	Ga0186133_1134532	F086665	VENRKNEPFICRLIKRHHFSTAIHEFFSLRDEPLRAVLWTQYYHVVVFPTFVSYPDISKIGKTDIRAYVAAGNNVVFLGGYLTLQVMNDIFGFSLRDDFKEGPYYRNDRNVRDTPFQFLPSRINEPSPRVFGAMSRSLPPGGRSLYDSLGNSVVFYISYDLGTVVYVGFQYDTPFNIERWVKVLHGAMEM
Ga0186133_123714	Ga0186133_1237141	F036560	RQKKQQAMFQSLYGKHAAALYAQAGDFNKTARFYYMKAEDAYYLANAQASYDDWRRARDQWDYFYHRK
Ga0186133_125212	Ga0186133_1252121	F026478	AIPSMAITRTLVVLAVLFVAIATAQKPKRKQVSADEEEVQKAVQFAHQELVKLSDSYRDLQIVKVQSAETARSAFADGTNYFLKLDIEVVSKCAAPLSPASTCRRGKYKGTNEVIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDPEEGKKDEL
Ga0186133_125723	Ga0186133_1257231	F005668	MLQKLFDLEDYAGTYRETRNAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE
Ga0186133_126532	Ga0186133_1265321	F092088	LERQSNSSFWTPYLDILPRKYNNIMYLTDAELRKLLRRPGCENTHNLGVQMRRTFNNFHRQYHQLVKENYPQLQFTREELLHSFNVCVVNGWEGAGPHQGMLVPFSDIATHRRESAQKASNRGFLSAAKEYQAGEELTFDYGLLNDAVLAYYGQPTPDCRGLRR