3300017204: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 599 ?mol photons light - Symbiodinium sp. Mp (MMETSP1123)

Overview

Basic Information

• IMG/M Taxon OID: 3300017204
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212023 | Ga0186311
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 599 ?mol photons light - Symbiodinium sp. Mp (MMETSP1123)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31102934
• Sequencing Scaffolds: 24
• Novel Protein Genes: 28
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	10
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000085	Metagenome / Metatranscriptome	2467	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F000665	Metagenome / Metatranscriptome	949	Y
F001154	Metatranscriptome	763	Y
F001767	Metagenome / Metatranscriptome	638	Y
F003025	Metagenome / Metatranscriptome	512	Y
F003026	Metagenome / Metatranscriptome	512	Y
F004725	Metagenome / Metatranscriptome	426	Y
F033310	Metatranscriptome	177	Y
F041581	Metagenome / Metatranscriptome	159	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186311_100153	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	3014
Ga0186311_102624	All Organisms → cellular organisms → Eukaryota → Sar	1636
Ga0186311_103203	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1535
Ga0186311_107315	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1085
Ga0186311_107832	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1046
Ga0186311_109342	All Organisms → cellular organisms → Eukaryota → Sar	948
Ga0186311_109928	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	912
Ga0186311_113147	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	757
Ga0186311_114086	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	720
Ga0186311_115141	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	681

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186311_100153	Ga0186311_1001531	F097454	CTQDHELSRHRAAQQVVFMPGWSAFAESAEAAVGVQSLGLVWPGTEPKASQGLEKIGFKRICEAVGAPTPPFTVLSEEDAPLVDLTDPEAKEACVQDFMKKVLDMNFSEKGLIKSIHGGGGKGTAHLHHPDQPDDVRRAVEKVITEMNRTDGIYFEQRVNTKGDGRFYQIELEVDGGTVADGGRFVWFNSGLQKVVEIGLSDDKIDLFMPQDLYQKSRKWAGDIAKMGNNNTRATMEALVFKNEKXXXXRRV
Ga0186311_102624	Ga0186311_1026241	F001767	MATNAPLLPKQKQPHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVGESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMMYMWNVLTAIFVGQCLMIVAYAAALASFPEHWWTCTLCFGIPFSYLAIQNIYIDHDVMHGATFPVYEFQRFLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPMGPNWYKYLLTVPWIPVIHFFGLNDTGGLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRVKHNSFVLCLWACVWLLGTYPLGRPLSEGWRFMFTVSVFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHAVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGHK
Ga0186311_103203	Ga0186311_1032031	F043414	EEEGGCSPWTMAKAMKTMKAKKPVRKVITSKAIKSTKAAPAAVGNFKIRIGIIHGKVFDPIKVGTHDRQYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHVDFMTMEQVTEKRLARNHLTFNFWGDMSIALMNEKPKLARRLQKIQSNPNTRHHPAWDYYEWILHKSRYMKACERQGIPMIDTIHVEKGFNAREVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGNVFDEIRNFFVDGEWAYSVYTDGVDYEGFWEQPAGKLKEACKALAIRTMEEVKKVHKWEGKRINSLLNRIDIGVIPDKSKKLGYHIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQASEMLKRSLAAKRKMPSPQKVRQLLAVLDERLAK
Ga0186311_107315	Ga0186311_1073151	F083686	IRFSRTTIRYCETMAAYHAQQLETLVACGCNCFSSVGMLLFNKLAVQAFPLECSLVAMQLLFAAVAMLIFGFPYLHIGSFRDFLRWCIVVPCFCGMLLTSILALKSAPMSLVIVLRSAAPLCALVIERFYPEPLRISQSMIFSIVLMMAGAVMYVSQLHSDHWEGIGWVLLNSVVAVCDRLLQRLLLSKDQQPVDISKTGITVINNLVGLIPVALAAYVKGEVAQLPGAYAALSTMDTVYIGLSCVIGLSIGYTGIWAQSLISATSFLVMINANKFVIIGIEAFGMHSKVLTTAQLLGACLSILGGIWYGKARQQMEQEEEERKQLIAPKMV
Ga0186311_107832	Ga0186311_1078321	F083686	ILLLLVKRDRTLRFTNMTQSEHMQIVVASSCYCFASVGMLLFNKFAVQDFPLECVLVWMQLFFAATCLAVFAFPYIHVGSSRDLLRWCMVVPFYCGMLLTSILALKTAPMSLVIVLRNTSPLGTLMIERFYPEPLRISAGMLGSILLMMFGGLMYVSQLPHENWQGIGWVFLNSAIAVVDRLLQRLLLSKDQHPVDISKTGITLINNLVGLLPVGLAAYVKGEIAQFPGVWAKLSTADKLYIGMTCVIGLTISYTSIWAQSLISATSFLVMINANKFIIIGIEAFGMHSKALNSIQIVGASLTILGGVCYGKSRQAIEQEVEERKSLLPSKA
Ga0186311_109342	Ga0186311_1093421	F058692	MDHPGGSAGYVRKEGSSFTPGQRKRLNVVAITINILAPWLVFCGIFTALSFQLHYRSPTLAWCTALAGLALSAVXXXAVSAFLAHRTRMREQDPTWCTFAAMAYFLATALAATLGDMNYWYHMQPFYDIENINSYPDVSPARERGQQLMDAGRVYFEDGTALDTSKSMSFKNLDRYCVAPITSGDAPLSSYDFWAVGVNCCGGAKGEFRCGEYTNPRARAGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAETMSYKASGLSHALAAVAAHFVFNVLCVAGAALAFSRL
Ga0186311_109928	Ga0186311_1099281	F048097	WLKIQAAVEGTVLFHLKVEAMAHGNLSDLVFLALLAISVQLLAFPGTLFEDLGPLKAQFKTKSSDLDAILKFAGVLILFMGMTFSAVSWNPINGKMAGFGAFITMGYTVYSSFTADGAFIPRALYAYALVILVGALHIFLFPSNPLPPKTPEVKNNHGNFSDVVALCLIGASLTGYFYPEHLFQEIGPLRAQFSVKSDDLMTMIKFVSGLMLIMALMLSGVKWNPINGKLSGLGGFIAAGYTAYSTYVADSEVFVPKLFYAYAAVLFLGALHIFAFPSNPSLPKPAKKKE
Ga0186311_111972	Ga0186311_1119721	F000085	ASSRLKPSRRSPPSIRELASSLSSVIMVREHFRWLAALLIVDIAAAQNWPGCQEQNTVIRNAGQALFTNLQGYGAVIGCFLDDCMSSDKFVANEIESCAKVCFSLPECTHWVWGTEEGEQKCWFRTGDAGREAGEGWISGAKTCHPPGTTVLPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0186311_113147	Ga0186311_1131471	F098651	MPAGRTKASRKHLTEYQGWPKGIYPMSDGWVPPCYPKEEELLEYEDRMKARKKATLVKRHLCIKEPQLQQLSKKNFARKGEYSMLAYAIADGEYSGEGDDRSYFVIVFYEPGKKTKVERAFKSVDAALADYEQVVVDPDSKMEQEEKFMYAHGAGDPGECILGEYEYQVLPKGSPEYDDPWGPTHPEGRFWE
Ga0186311_113642	Ga0186311_1136421	F000241	KRFTQVATWLLGFLNRIALAMARPTLLPAVAALAAVYSIASFCFVGVAQTPRDCSRVPARVSAEYLERCGPKDSDVPFDAMQASGPGASVEFKKRPFGILRYQPGQGMKGAMAMEIIPKSRYPGDPQGQAFAAGIQSGWVVQSINGQNVQGEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEPPMTVVFSSIPGYVYKGAALTEDGQDGFAR
Ga0186311_114086	Ga0186311_1140861	F003025	CNKEFWSKWVPRRVKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNEFLAQDPARTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWMPNGDEETQMQKTQKKRSLMMKQGK
Ga0186311_114169	Ga0186311_1141691	F000241	MAGMRRALLPLAALLLAVYNLASFCFVGVAQTPRDCSRVPARVSAEYLERCGPKDSDVPFDAMQASGPGASVEFKKRPFGILRYQPGQGMKGAMAMEIIPKSRYPGDPQGQAFAAGIQSGWVVQSINGQNVQGEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEPPMTVVFSSIPGYVYKGAALTEDGQDGFAR
Ga0186311_115055	Ga0186311_1150552	F000085	HAAQAGVPGGQMARAVRLLGLAWCGVAGQDWPACQEQNIVIRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSMDSCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGGRACHPPGQQAIVMGNVECWIDGFNYDTCCDPKFGPSGNAQCWDGVFNYDRCCFPKDE
Ga0186311_115141	Ga0186311_1151411	F033310	EMVARHGFSFRENPVGIGRNVSQPPSWSENKNAKGRKEYDLYNCSSLEAFEMRFTEQGYPMRSFVRCYRVSWFITNGWYSPALKNRMRELNKWPPPEKYTKSDWLSWTQADAEVNRAILGYCQFMRQQLKDTMDSNTAEDFRHSTDPVDRVLWHMRSEESRTFKNCVSVAKKIRT
Ga0186311_115436	Ga0186311_1154361	F054880	IDGSRDGAPTFFEVPLSSTKHFISVYSPTDSASYTLTILADIGAWPRPGSNGRLAARQLSELQVQISWDAAGFIPEGVTEVKQYWVYSSMLVEWDNRTNMAVFLRSNKTMNTVCGLQNNTDRPYTTVPASECSNGKCNVTIGGVITDKRYVFNIVAESERGHRMAYAGLIMRTDWEVVRQAASERTLRVVGAVSGSVLGMVIIIYFLMLKLYG
Ga0186311_115498	Ga0186311_1154981	F001154	MVKVTVGKPEDPWCEIDLTEEDVEDWKKGVDIAEEKLKEVIQLPPITLDNCHEREDGDLQWDEITFEEEVNGKYWHAVIMSLHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0186311_116785	Ga0186311_1167851	F054545	GHAMRQCFPEPVEVPLGDPVSKVRAGWQCTAYITESARPIICGGVRAEGPSVADMQQAGEDGEGVAPEMRGGYKGGGPQPEAGVMDMVSTTGVEVMTEVVTEASVGEAHGVLVCYDGTLRGWGYNRQKQAIGDETDDTFVKPQAVDDVPFDIYKGLSVAVGGAQSYAIMQQRHP
Ga0186311_117676	Ga0186311_1176761	F000665	RFHGMEESLGAVYYNFPHAGAVSGFFDGHPCVNWRHENLMRLFFRALRSFMKPGGLVKVSSSKGAVGVRCFYITEAATENEFVHIETMPFLEWHLHRYGRSYGDKRDVYRRPGQGEGYNVQRAEADMVYTFRYAPTGAVLPPQSIRMPPKFSVLKSCPDGPFRMLIGDARERHATALYKRFVTECSGTHVG
Ga0186311_117940	Ga0186311_1179401	F076115	LCGRLGCDARVGLTKKDVHKLFEKAPQSVWEEVYRSINPLAQMVKKGAERLPDTFLERPITEFLFEDEDQFAKVHVELNAHLYYGAAEAITADHVQSYFGKQRMELHIVAPGSYGAQDLYLWKMVITPLSGEIVPEDSTLELKATTGRFGSQKLTLKLMKSKKKRWYKVGQAVTGQRI
Ga0186311_118878	Ga0186311_1188781	F071919	MEKEEKVQQYKTIKRMQKTFLVRCNESLTHIIPGNGVKPASAIRRIEQQLKDERHRLGKLNQEELMAQMDVTSQKKVKNAQELAAKKAELIEHIKQLEKQLLQYELL
Ga0186311_119481	Ga0186311_1194811	F004725	LKVVWAHCVFQGSCQALVVMVSRAPLLATEGKTGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVLGYCAALACFPEYWWTCTLCFGLPFSYIAIQNI
Ga0186311_119532	Ga0186311_1195321	F085123	SQYRRFRDKMDADTVEALQDHYREARKDERRCSDKHRSDVASVLKSLVEGSVHVNHRTSCGLLVDVAALRKRSSTDGFVHVDLDSNVTFVRSLDHDDPATAGIVIEGAVALRRRILQKQGLRLVTVRESEWRDLDESKEKRRHLRNLLSALGDVLE
Ga0186311_119554	Ga0186311_1195541	F004725	VLLLIFPLLAMATSAPLLAKEGKGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVVGYCAALACFPEYWWTCTLCFGIPFSYIAIQNIY
Ga0186311_119680	Ga0186311_1196801	F003026	GFSAAWMFITNFTHSLPWNEFLAQDPARTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWMPNGDEETQMQKTQKKRSLMMKQGK
Ga0186311_119896	Ga0186311_1198961	F086592	AYYDRGPLSRPRSKMSEEFAVVRSIIEDKLHQEFYNVPTKDLPPRMQPRQLPNLQDAMKIDWDDWKSWEWMQPGWKGVKMHSQCVINADGSAEIRSVWK
Ga0186311_120753	Ga0186311_1207531	F041581	YASVFVQDEDAQDEEMEIRRMHELVEQTTQVLQQARNELIALNQRQRSDSSTTNTEAKAKKKETAACKHIDQLLWKAEVDLENVEDMYLRHIDNQKDTYSLADFNQRVSRTFSDLEESLNTQLDSFKSYFFR
Ga0186311_121005	Ga0186311_1210051	F067800	SSGSSPAAPCPVPSPAMDKVMPVVGGLAGLWVASKVVPIMYRWELIPGVGSEEWWARAKTIRYDHYTEGIVYSPYDTGEPIREMPEECKGKMLLRQRRGGWKLQSEMEQE
Ga0186311_121261	Ga0186311_1212611	F068485	AATVKHGDQAHESPSEGWVPQAVAKRVSLCRVAADWPEEGAGTLGLFKGDLIAVSKEAERGWVYGERISPDRSDAATDGWLPKKVLEYILV