3300017202: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 236 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0147)

Overview

Basic Information

• IMG/M Taxon OID: 3300017202
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211812 | Ga0186100
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 236 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0147)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35441514
• Sequencing Scaffolds: 10
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1
All Organisms → cellular organisms → Eukaryota → Haptista	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003766	Metagenome / Metatranscriptome	469	Y
F008013	Metagenome / Metatranscriptome	340	Y
F008555	Metatranscriptome	331	Y
F010978	Metagenome / Metatranscriptome	296	Y
F012945	Metagenome / Metatranscriptome	275	Y
F022203	Metatranscriptome	215	Y
F035176	Metatranscriptome	172	Y
F038555	Metagenome / Metatranscriptome	165	Y
F050807	Metatranscriptome	144	N
F068410	Metatranscriptome	124	Y
F069584	Metagenome / Metatranscriptome	123	N
F080828	Metatranscriptome	114	Y
F080844	Metagenome / Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186100_104241	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1600
Ga0186100_110437	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1032
Ga0186100_111549	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	970
Ga0186100_113525	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	872
Ga0186100_114108	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	846
Ga0186100_114221	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	841
Ga0186100_114223	Not Available	841
Ga0186100_115962	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	769
Ga0186100_122464	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	547
Ga0186100_123419	All Organisms → cellular organisms → Eukaryota → Haptista	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186100_104241	Ga0186100_1042411	F050807	GAQIAVASAVDGNCVVSLYGRKGDKLRVHNLGAGPPSWCDWDCAGHCLALMQEGTGLYLWDVGMPEQLAASEGNQPLRLCPSITVATSFCMWSRVHSQLAIGTQGGKVIVFNKKEGVMQLHDRKGKHGAAVTCGDWLFDNRLGLASGTRVKISKPVPEAGAQWESYSKFKLSGMLSRVPRKFKDAGAPKLLSFSLKFPPFVAVCIGDNYMLVFGTSGHHANEDVGLTFPDDYGPITGFQWLEDDVVLVALANGYVTSVDFGAMVRMRQQHGLPECVKATGTTKVFNEYLKCLTYSTASQKIACVGDRGFKVIQRKEEELEVLADISLDYELTLGNCLETIRWDSEGKAVCICATNGYMWTYDILTQ
Ga0186100_109888	Ga0186100_1098881	F010978	RVSSPDSRTRRFRHGLVLQSFRAAIALFANSAVDRTDDGLPWEITLTGFCVFAVVFSAIYAKRTEVALSVICIILSCVPTYFVHNYEVPCSNWELGSKFSLTSSKSTVLDGVFRDEPNASRFDKFLPLGVSMYTMSIFDPGIAIQCNTTEIYHSSIELKDAAGTKTHDYLLLSSPRKVKDKTTAIMLLARVPVSIDLWPEGVEDHSYNLQEASNIIAPPIVVGELLKLDKGPAIQHLQKKHHLRPFLLDVYRVDYIFG
Ga0186100_110437	Ga0186100_1104371	F008555	QATLLSPERTVQPTLKKMIYAVALLPAAVLANTAEVSTSDVRKGAAFENIKASWGKALNVGDFKTNLRCNYDYNENKDFLKEVSLAGDLLDGSGDDLSVSYDVNHNFKTKNTEVKLTANTQGTTLSVDYDTESNIKEVSAARAVDVADRSVDLQPSWLVKAKTARVKMMSALGGDNKLSAQVDYNTDGRSTSYELGYSRQLEEGKEVSATFKPDSSELDVEYVDSKFESGATWAAKASVDTSDAGNLLDATKLTLKRSWSW
Ga0186100_111549	Ga0186100_1115491	F003766	PAHPREAMPTWNAPTLAVSALIAYQVFYGVRGALGDDSAVPNALKPATLTFVQGLGYHMLMDACFMIGIVVNDIAHVMMPSFVAAMLVVVYSQFSIGDLPGAAPAGALALVFTWLARGAPARKPMKWNLATVFYSLQGLLVFLVGIAMLFGDDAVIPEQMKPMDSLKVKFIGTTELTLSAYLFGSILAGHAQAIQPFCALFMLVALVLHYVIGDFEGCPLIVVLAIAHLCLGLFWKGKEEAKKL
Ga0186100_113525	Ga0186100_1135251	F012945	TCGQAGLVRVGAGAAVSAAGMSNTKLTYTDSVICYKELIEKEDATRRDWAGKYGKSWNSKWRPIEPFEPNGASDSKMELPPTVPPAARKYPQLYRDSVGDEGLAGGTPKRYGGRWDVTSNLTPINHGDKPPRVVKKGPHDLYCDIGYNCWNMAGKARTANYGLMGTFEREFWTNTPGELALVWDYKGEGIGNAAVLAELDKEVAQS
Ga0186100_114108	Ga0186100_1141081	F022203	PPADHRGPNQPRQPTHPEINMLYKLVAMAAFLVCTDALKIDANMGRRSVVAKGAALGALAPLAAFAELKKAGDAEIYKRADEGKLNAARVIERAKTGDLVDGSSATCSELDALIAVDRDAIEFEKDKVDARFGNDKAKVQATEDTLQAQVDNLKKIRKNKGCTSAQANLNQASDFEVYKRADEGILNSARVIERAKAGKLVDGSGATCSELERIIIQDKKAVQFEKDKLEAMGSKVDPKDKQIVAEAEKAIEKQLVKLAGLQKAKGCQ
Ga0186100_114221	Ga0186100_1142211	F035176	RPFVVPPRATMGVLPAAADKPKILFYGAMMAIQNYGFYEAYYGLYPQIPSFVGSVDCGTLRFWVGFFALDCFIESFCCLWMAMGGYVSSNFWFAFGWILHLIVALPYCVSTVAIPISMYADEGKVCRKAMGPAEDVLSAVYWVHCSLFMCYVWMMLSITYYSFLKPTFITKTKIGDSA
Ga0186100_114223	Ga0186100_1142231	F069584	RKRTHRRRIPLLSATMSALMDAPLSETGFSTTCCADCMTGPFPDQKMIDDKSLWFGEKPPGPCYIACPCDPLIDASEELGFFEDGTSCTAAAMPCFSSAPPGAPCAKGTGCYCTTFWCCLIATAAGPQAPCLLCYIAKLRQKTMEKAGVPPEGLGKAFMYSLAPGIAVNQISRELALRKMHPRLKTYTGTVTTYKGGSPSVEVMVR
Ga0186100_115962	Ga0186100_1159621	F068410	RVTIGVEYDGFKMGDKGNGDMKAKRNMTVDHYSKWFLHIFMDADKQSPTYGLPVRFYGPYSGFAVYIAINKTQPPAEAWDTACVGEQINGWPSEEHKPLFPCVGKKIKDYPCMVVGKTHKEVCDPWANASAAVNQTMEQMPQFETFKGAFGTVRIPSNLLNTPQV
Ga0186100_118266	Ga0186100_1182661	F080844	CTHARWRCVALSRRSMAEEKAPQPGYVVGAVTTRLTVTVPHGIAGGELVRVAAPDGSYHSIMVPAGLMAGQQFSVELLAGSNAVDYAKLKMELEAERALRRETQQEALRCRTALEELQQKRMADHAFFRDMIKRQRRSIEHLTEV
Ga0186100_118894	Ga0186100_1188941	F038555	FASLGRELLAGKLKLAKVYGQEEPPAAEDELEWEARYFVLFDSRRICHFDDLLDGQPLGDRGLIYLTNIKSVEKVVGVPTFVMKADSKVYMFKLEPHDEATMRTWIAAISQELDLAR
Ga0186100_122464	Ga0186100_1224642	F008013	NCKPCGAVEGYISPFTVSPGCYKILTEDDDWITGMLTMKVGEKDEFHHHKDHLIYVLEGDGVTIYPGGKEEDAMVVPLAPFAGIPAPMAAPPFASHTLKNTGTKELKMLFFEAKK
Ga0186100_123419	Ga0186100_1234191	F080828	YKLCKLRLRGRKPKVGDEFRCGPGEFCEEVDCLDKCWLPTWCKCESDGPLAGRMLCAEDCFAHPSTQWGLCVKLPDGQDEPEDEEPIKTHFHFHTQHELLYNAKLHIDEDSPMRREPTPKLHDEL