3300017193: Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron w/o nitrate, 25 C, 35 psu salinity and 463 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0973)

Overview

Basic Information

• IMG/M Taxon OID: 3300017193
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211956 | Ga0186244
• Sample Name: Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron w/o nitrate, 25 C, 35 psu salinity and 463 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0973)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32345451
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	7

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sargasso Sea
• Coordinates
  • Lat. (^o): 33.1833
  • Long. (^o): -65.25
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076756	Metagenome / Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186244_108998	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1285
Ga0186244_109052	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1278
Ga0186244_110251	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1152
Ga0186244_111059	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1077
Ga0186244_112477	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	951
Ga0186244_113550	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	865
Ga0186244_116305	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	664

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186244_108998	Ga0186244_1089981	F076756	MDQDQKMEGLDNSNGGELDESDSQSVTVSELGMMNRVAGISKRMQNSRMSMVSATLTISDFPVEIQGILSEAFDPDGDGHISTDELVEGAKISIQTRKFNRMLWKGLAVAIFVVLALVGLNAGLTYGIVDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_109052	Ga0186244_1090521	F076756	MSQAIAPIAPIENDEHEFMKSHLSVVSSALAISNFPVEVQGILTNAYDDDGDGHISTKELVEGARIKIRTEKYNRILWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_110251	Ga0186244_1102511	F076756	MPEDTNDHEFMKSHLSVVSSALAISNFPVDVQGILSNAYDDDGDGHISTNELVEGARLKIRTEKCNSMLWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_111059	Ga0186244_1110592	F076756	MSQAIAPIAPIENDEHEFMKSHLSVVSSALAISNFPVEVQGILTNAYDDDGDGHISTKELVEGARIKIRTEKYNRILWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
Ga0186244_112477	Ga0186244_1124771	F076756	MPEDTNDHEFMKSHLSVVSSALAISNFPVDVQGILSNAYDDDGDGHISTNELVEGARLKIRTEKCNSMLWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
Ga0186244_113550	Ga0186244_1135501	F076756	GILTNAYDDDGDGHISTDELVEGARIKMRTEKCNRILWRGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRDCNSC
Ga0186244_116305	Ga0186244_1163051	F076756	GILTNAYDDDGDGHISTDELVEGARIKMRTEKCNRILWRGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEFPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR