3300017190: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium with seawater, 5 C, 35 psu salinity and 129 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0907)

Overview

Basic Information

• IMG/M Taxon OID: 3300017190
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212324 | Ga0186612
• Sample Name: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium with seawater, 5 C, 35 psu salinity and 129 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0907)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38560270
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Ocean
• Coordinates
  • Lat. (^o): -48.1
  • Long. (^o): -24.25
  • Alt. (m): N/A
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004251	Metagenome / Metatranscriptome	446	Y
F010973	Metatranscriptome	296	Y
F015298	Metagenome / Metatranscriptome	255	Y
F016355	Metatranscriptome	247	Y
F038969	Metatranscriptome	164	Y
F044273	Metagenome / Metatranscriptome	154	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186612_110547	Not Available	1175
Ga0186612_111737	Not Available	1080
Ga0186612_113901	Not Available	931
Ga0186612_114477	Not Available	894
Ga0186612_114769	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	878
Ga0186612_114817	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	875
Ga0186612_115962	Not Available	808
Ga0186612_116183	Not Available	795
Ga0186612_116416	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	783
Ga0186612_116498	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	778
Ga0186612_116900	Not Available	758
Ga0186612_118534	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	676
Ga0186612_118662	Not Available	669
Ga0186612_119499	Not Available	631

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186612_110547	Ga0186612_1105471	F010973	MLCAVNKNSTMTPFASNYETIKETSSKDKSHDLALISGNMTIPSQGKIQSTFLQSVLSNKFFVVLVVVVLGTGLVAYNANPVPSSIQFRLGHYAAIVDGNTGGGITGSKNGGVTIGGLPNWRPSHKSF
Ga0186612_111737	Ga0186612_1117371	F010973	MTPLTSNYETIKETSLEDKSLDTPSQGKVQSTFLQSVLSNKLVVAFVVVVLGTGLMAYNANPVPASSQFRLGNYAAIVDGSKGGGLTGSENGGELQDSGSGCYSCVQNDW
Ga0186612_113901	Ga0186612_1139011	F016355	MPTENTSLKNTTPVGDSNTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSADKIAEDAVALADYQVDSANLALTKDIFGVGTVSENEEGDNNPCFCPGCGFCLVPLCGC
Ga0186612_114477	Ga0186612_1144771	F010973	MAPFTSNYETIKDTLSNNTSLDLAPTSDDMTTPSQGKIQSTFLQSVLSNKFFVVLVVVVLGTGLVAYNANPVPSSIQFRLGDYAAIVDGSKGGGIIGDENIVAGGDLYPIPGCPFDDGCIPLE
Ga0186612_114769	Ga0186612_1147691	F015298	VRLRKYKQRDNYLYCIIMNGILDYLITHKDWLLLVCFSVDAINTMITFPLIMWNGPKWLLKSTDPNAKEKIEDDASSSLSSSSSNKTVLDLSDTERQSFVVLWEVFSICYEGYFGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSCLKFLKTGNPQVKVKLMSILFFYWPCYGGYCLLHLIERYLL
Ga0186612_114817	Ga0186612_1148171	F015298	INRTIAKIQATRQLITMNGILDYLIKHKDWLLLVCFSVDAINTMITFPLIMWNGPKWLLKSTDPNAKEKIEDDASSSLSSSSSNKTVLDLSDTERQSFVVLWEVFSICYEGYFGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSCLKFLKTGNPQVKVKLMSILFFYWPCYGGYCLLHLIERYLL
Ga0186612_115962	Ga0186612_1159621	F016355	MPTENTSLKNTTPAGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGIQHLQSSVYEITEGAVALKDFQDDSANLALTNDIFGLGAVSENDEG
Ga0186612_116183	Ga0186612_1161831	F010973	MTPFTSNYETIKETSLKDKSLDLALTSGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVILGTGLMAYNANPVPPASQFRLGDYAAIVDGSKGGGLTGSNNGGTYKDGARLGNHPE
Ga0186612_116416	Ga0186612_1164161	F004251	MVNSQQLQNDTSKFLNEDVLAVGIFDVSLTAGKRNVAPVAAGLAAGLITKHVQKKIINKDDDKEYSMKNRMLTGAIGLVTAAGTQQIMKHHDANKNGLTPIMIVAVTKHKVYLLDWKGTHNMGKGPTETLFEFSLSKATIKNHTRKLVHHTVEINEDGNHVKIECNLGATHSNKKMNREVIDLLKQN
Ga0186612_116498	Ga0186612_1164981	F004251	YGTSLKAKEYYACHIITKQTKEKHTSKQNYTTKSNTKMVNSEELKEETALFLKKDVLAVGIFDVSLTGGKRIVAPAAAGLAAGLITKHIQKNVIDKKNEGDEEDDKKEYSMGNKFLTGAIGLATAAGTQQLMKSHDAKKSGLTPIMIVAITKNTVYLLDWKGTHNKGKGPTEILDEFNLNKATIKNHTRGLVHHTIDIKEDGNHAKIECNLGATHSNKEMNREVIKLLKETN
Ga0186612_116900	Ga0186612_1169001	F010973	MTPFASNYETIKETSSKDKSHDLALISGNMTIPSQGKIQSTFLQSVLSNKFFVVLVVVVLGTGLVAYNANPVPSSIQFRLGHYAAIVDGNTGGGITGSKNGGVTIGGLPNWRPSHKSF
Ga0186612_118534	Ga0186612_1185341	F044273	MVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIQNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATMKFHTRDLTAHTIDITEDGDSAKIVCDLGPTHHNKKMNREVINELKKN
Ga0186612_118662	Ga0186612_1186621	F016355	MPTENTSLKNASPALDSNASNNMVIGKINTYQRTFLIVAGSLLALLVLIAVAGTSGVQHLQSSTYEIAEGAVALTDYQVDSANLALTKDIFGTSAVSSENDEGNIRCLSWCCDGPLGCGCFCA
Ga0186612_119499	Ga0186612_1194991	F038969	ASTTTVTRHNNAPHEAQHEQSSRSVGSERPTRRSKSALACSPADIGGAAATLLSMKMDGAKAIVNPTQVLTDASYVVMDPNKFFPDLQISKLRRQYAQVFGRLMVLGTTFLPHHGVHPEEMAVQLFLLSVSMKPIIRSVQLYQCITSAKGDCAEECAFEFEELEAALNIKTSPAIV