3300017183: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 553 ?mol photons light - Mantoniella sp. CCMP1436 (MMETSP1468)

Overview

Basic Information

• IMG/M Taxon OID: 3300017183
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212321 | Ga0186609
• Sample Name: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 553 ?mol photons light - Mantoniella sp. CCMP1436 (MMETSP1468)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25479904
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Mantoniella → Mantoniella antarctica	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Ocean
• Coordinates
  • Lat. (^o): -78.8333
  • Long. (^o): 163.0
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029609	Metagenome / Metatranscriptome	187	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186609_101812	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Mantoniella → Mantoniella antarctica	2137
Ga0186609_110869	Not Available	738
Ga0186609_112255	Not Available	651

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186609_101812	Ga0186609_1018123	F029609	MKLDDFNHELPSASDAGLHVWVEVVGDDGDVDGQLIQL
Ga0186609_110869	Ga0186609_1108691	F029609	NHELPRTPDAVPNVWVEMVDDDGDVDGHLMIVDDWYWRWSLY
Ga0186609_112255	Ga0186609_1122551	F029609	AQRWMKLDDFNHELPSASDAGLHVWVEVVGDDGDVDGQLMTVERAS