3300017182: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium w/o phosphorous, at 18 C, 32 psu salinity and 353 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1366)

Overview

Basic Information

• IMG/M Taxon OID: 3300017182
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211819 | Ga0186107
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium w/o phosphorous, at 18 C, 32 psu salinity and 353 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1366)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40118266
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009840	Metagenome / Metatranscriptome	312	Y
F024007	Metagenome / Metatranscriptome	207	Y
F088199	Metatranscriptome	109	N
F096482	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186107_122563	Not Available	724
Ga0186107_122764	All Organisms → cellular organisms → Eukaryota → Haptista	717
Ga0186107_124459	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	654
Ga0186107_126588	All Organisms → cellular organisms → Eukaryota → Haptista	579

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186107_122563	Ga0186107_1225631	F009840	LAPWAELIEFSMRARRSYLSWLLLCSFRGTSALHLPSRPGVSRRPLLQHALALGALAPGAATAAAEKKPSLKEVVAQIDAGTPKAERNAQGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP
Ga0186107_122764	Ga0186107_1227641	F024007	MAKPVTAPSKNDGGVIAALVLLMAALAALFFSAVMLYASAEVTLSKEQKEKTVRARRLARLLSGWSNVGNAVVHALLVIMLLTDTERYKVFFPDEAEMPIGPVVLGAINGFVGAKTLVGHGIVLAVSWNSFVAVAGCLLPVVWPKFIDVGLSEWPYQSIFLWLGIYAFESTAFFFSAVAFSLKDAGKKAA
Ga0186107_124459	Ga0186107_1244591	F096482	HILNMHIVVFLSAQSFQPLLRPASPLPAARLSPPSCMARWTQQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL
Ga0186107_126588	Ga0186107_1265881	F088199	LAEIHMRCLVLFALVVGAVSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQFGVEVPGNFAAFNVRPRNAKKHLLVPSM