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Sample 3300017179
3300017179: Metatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater, 21 C, 33 psu salinity and 136 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0944)
Overview
Basic Information
IMG/M Taxon OID 3300017179 Open in IMG/M GOLD Reference Gs0128947 | Gp0212121 | Ga0186409 Sample Name Metatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater, 21 C, 33 psu salinity and 136 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0944) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 30934450 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota 2 All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Irish Sea Coordinates Lat. (o ) 54.085 Long. (o ) -4.77 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F024700 Metagenome / Metatranscriptome 204 Y F098706 Metagenome / Metatranscriptome 103 N
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186409_107637 Ga0186409_1076372 F098706 MMHSGWPATSDPWPALCQSVSIGDFKTTVKAKYDYNANRDFLKEVSISGDLKQADNADDIAVGYELTRDFASRNTNVRLTASSHGYSVSAEYDPEEQLREVGVAREVDVGDYKVDLQPTWLVKAKAARVKLMSAINDGKDRLSAQFDYDVDGQQAKDVELSFARTLEEGKVLSASFKPDKSNLEVSLEDSTFEAGATWTATANVPLDSDPSNILDAARVTLKRSWGW Ga0186409_110662 Ga0186409_1106621 F098706 MLSASLFALAANRAEVSTGNLRGDNKFDNLKANWDKSVSIGDFKTTVKAKYDYNANRDFLKEVSISGDLKQADNADDIAVGYELTRDFASRNTNVRLTASSHGYSVSAEYDPEEQLREVGVAREVDVGDYKVDLQPTWLVKAKAARVKLMSAINDGKDRLSAQFDYDVDGQQAKDVELSFARTLEEGKVLSASFKPDKSNLEVSLEDSTFEAGATWTATANVPLDSDPSNILDAARVTLKRSWGW Ga0186409_113801 Ga0186409_1138011 F024700 AMASPSTAGVRAPSAHGRRQGIYAGMDLTSVVSTLESHWVVLEAELAEIQKDYAAMRAFTRKYGEYWNRSLTTLKKMRMEKENQLKEIKFQMELFNLHIQQGRDLCYKLSQVASTIKTQPHQLAPQLSVEVVSPILANAQNPLAVPQRPSG
