Sample 3300017172

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300017172

3300017172: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 284 ?mol photons light - Proteomonas sulcata CCMP 704 (MMETSP1049)

Overview

Basic Information
IMG/M Taxon OID	3300017172 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211886 \| Ga0186174
Sample Name	Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 284 ?mol photons light - Proteomonas sulcata CCMP 704 (MMETSP1049)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	35781073
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	7
Not Available	4
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	4
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005668	Metagenome / Metatranscriptome	393	Y
F021541	Metagenome / Metatranscriptome	218	N
F023110	Metagenome / Metatranscriptome	211	Y
F026478	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F036560	Metagenome / Metatranscriptome	169	N
F067806	Metagenome / Metatranscriptome	125	N
F087277	Metagenome / Metatranscriptome	110	N
F097384	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186174_110503	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1195	Open in IMG/M
Ga0186174_112341	Not Available	1067	Open in IMG/M
Ga0186174_112810	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1038	Open in IMG/M
Ga0186174_113097	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1020	Open in IMG/M
Ga0186174_113171	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	1015	Open in IMG/M
Ga0186174_113476	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	996	Open in IMG/M
Ga0186174_114455	Not Available	936	Open in IMG/M
Ga0186174_114883	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	912	Open in IMG/M
Ga0186174_115036	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	904	Open in IMG/M
Ga0186174_115130	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	898	Open in IMG/M
Ga0186174_115171	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	896	Open in IMG/M
Ga0186174_115912	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	855	Open in IMG/M
Ga0186174_116403	Not Available	830	Open in IMG/M
Ga0186174_116608	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	819	Open in IMG/M
Ga0186174_117175	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	790	Open in IMG/M
Ga0186174_117817	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	757	Open in IMG/M
Ga0186174_119825	Not Available	664	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186174_110503	Ga0186174_1105031	F023110	MLPKMVRFMSLGAAEDDPWVWTSSWNSDMPAFFSGMPNGVMDNIYDDLDDSPQIWGHSAPVDPTEYQNEYIGQVIGIY
Ga0186174_112341	Ga0186174_1123413	F036560	VPQQKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186174_112810	Ga0186174_1128101	F026478	PQPLSPSAPQMKVLRVAAILAIVACSSAAKPKRKAIDLNDENVVKAKDFALAEIIKLSDSYRDMKINKLMTAETARSAFADGTNYFLKMELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEDSKKDEL
Ga0186174_113097	Ga0186174_1130971	F087277	AMAIGAMQAPIASPAPYNPVHPNSKPAQAHRIRIAFAAMATLAALLATVCVVLQSSTAEPGPVVAGEDRWLEDGRASLSLFRVARTPMQKKLLDGHSLPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYELQVQLDAIHTSLDQLADQTGVYLTNPPVVQVDESVFDQAATDVSRFRKLVERIPEMHNAGYYWVVQYNVIRTELRKASAQLTQMVNMAKHHFLEVADSIDSMRMNVEAIHE
Ga0186174_113171	Ga0186174_1131711	F036560	MIENLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRR
Ga0186174_113476	Ga0186174_1134762	F021541	MFSVLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNRSVNTVFPLSAFFQGA
Ga0186174_114455	Ga0186174_1144552	F021541	MFSVLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVSLFLPVWC
Ga0186174_114883	Ga0186174_1148831	F067806	AAMASPSLEAPSLGLAHNSFSLERRPNWRVRAAISLAVATVALIALVAVGGEAPEHDRVSLSLQGLSHNPSSDAMNGGTSGVTAHNGDASDFIDTADLGDYVDAIIGPAPTGLTDGGFKKRGSIAVSKVDASGFYYLNIQGEPGHALKCILQGSDGYHRHWKGKCQANRHRIVQQHRDSVDPPA
Ga0186174_115036	Ga0186174_1150362	F021541	MFSVLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNR
Ga0186174_115130	Ga0186174_1151301	F032673	KAYGALEAPQSSDSATQGSKWRSPMYLAAAAAGLAAIAIVCSVALMGFDNDDGSVTLAAFNKQQMDDILAKANKMSTSQLRELVGNLEAGKGMKIAAGTSSLATVNENTAAQPDGAIMENVPATVVAPVPGPPDFNGASAVIARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRIYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYVGKSQIQTGHVPRGIPGEFDIMTCRDLGNGEVQYFRMRYD
Ga0186174_115171	Ga0186174_1151711	F097384	VPGVLQQVRLFTSLDDATVRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVVRYDMGTVCYVGYNYNTPFHADQWTRVLHCAVKM
Ga0186174_115912	Ga0186174_1159121	F021541	LLNSNSLVQMFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186174_116403	Ga0186174_1164032	F021541	MFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVSSVLTSNILRFV
Ga0186174_116608	Ga0186174_1166081	F021541	LLNSNSLVQMFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNRSDQLQIP
Ga0186174_117175	Ga0186174_1171751	F021541	MFQTLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYFYNR
Ga0186174_117817	Ga0186174_1178171	F021541	MFQSLYGQTAAALYAKAAGQNAQARQLYNAAADTYYKANDAAAYDDWVRARNHWDYF
Ga0186174_119825	Ga0186174_1198251	F005668	MLTWMFLSREMFSLLFDLEDYATTYRATRDAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE

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