3300017168: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 15 C, 32 psu salinity and 282 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0145)

Overview

Basic Information

• IMG/M Taxon OID: 3300017168
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211800 | Ga0186088
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 15 C, 32 psu salinity and 282 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0145)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31099042
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	2
All Organisms → cellular organisms → Eukaryota → Haptista	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003183	Metatranscriptome	502	Y
F003766	Metagenome / Metatranscriptome	469	Y
F005747	Metatranscriptome	391	Y
F013853	Metagenome / Metatranscriptome	267	N
F016763	Metatranscriptome	244	Y
F022203	Metatranscriptome	215	Y
F024007	Metagenome / Metatranscriptome	207	Y
F054537	Metatranscriptome	139	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186088_107311	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1137
Ga0186088_107669	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1105
Ga0186088_108129	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1070
Ga0186088_110132	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	939
Ga0186088_110429	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	921
Ga0186088_111688	All Organisms → cellular organisms → Eukaryota → Haptista	852
Ga0186088_118707	Not Available	579

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186088_106226	Ga0186088_1062261	F013853	MSRSRCAASPRGNQLVLHLFRRDGSIYNQAVLGGSGKCLWLEWECKGQSLGLLQEGSGIYLWDMPAEGSDEVTVPMSLCPSITQHSSFCRWSKTASLLAIGTQQGKVIIFNKAEGVMQLHEKKGKHGAPVTCGDWLFDNRLGLASGLRVKISQPIADTGSKWDSYSKFRLGGMLSKVPRHIRAAGDPNRLAFTLGYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGQIAGFQWLPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTKVFNEYLQDLSAFYTSATGQRVACCGDTAVKIVHRTGVELEVHLEVALDRKPTIGEFLDKVEWDDRAAAFACSSTDGYLYVHEILD
Ga0186088_107311	Ga0186088_1073111	F005747	ANFALYSQIRSTLWYDFPLNGTSTGTAVDGMAKLRHDTFYDDLKYKWLDNGLVSEVHLQSRAQRDANVTGPMISLLHGLLGYGKYMGGLTCLADPVGVPVLGGSVVVNGSAHSSFMEGADYKGRVTIGVEYDGFKMGDKGNGDMKAKRNMTVDHYSKWFLHIFMDADKQSPTYGLPVRFYGPYSGFAVYIAINKTQPPAEAWDTACVGEQINGWPSEEHKPLFPCVGKKIKDYPCMVVGKTHKEVCDPWANASAAVNQTMEQMPQFETFKGAFGTVRIPSNLLNTPQV
Ga0186088_107669	Ga0186088_1076691	F003766	TPAHPREAMPTWNAPTLAVSALIAYQVFYGVRGALGDDSAVPNALKPATLTFVQGLGYHMLMDACFMIGIVVNDIAHVMMPSFVAAMLVVVYSQFSIGDLPGAAPAGALALVFTWLARGAPARKPMKWNLATVFYSLQGLLVFLVGIAMLFGDDAVIPEQMKPMDSLKVKFIGTTELTLSAYLFGSILAGHAQAIQPFCALFMLVALVLHYVIGDFEGCPLIVVLAIAHLCLGLFWKGKEEAKKL
Ga0186088_108129	Ga0186088_1081292	F022203	RGPNQPRQPTHPEINMLYKLVAMAAFLVCTDALKIDANMGRRSVVAKGAALGALAPLAAFAELKKAGDAEIYKRADEGKLNAARVIERAKTGDLVDGSSATCSELDALIAVDRDAIEFEKDKVDARFGNDKAKVQATEDTLQAQVDNLKKIRKNKGCTSAQANLNQASDFEVYKRADEGILNSARVIERAKAGKLVDGSGATCSELERIIIQDKKAVQFEKDKLEAMGSKVDPKDKQIVAEAEKAIEKQLVKLAGLQKAKGCQ
Ga0186088_110132	Ga0186088_1101321	F003183	GIGGHAWADENDKIDLVDCEVVSPPNATNMSTVHWPLYPKKFTVLPVDGRPGYSDTLIGWKTDXXXXTDPFCFAFFPQNDSIPPLCYRSQDSTGKWYDAYNESTRSDYNIKLTGLFSVFPNITASIMQVDWQMWIVNHLWVVDQCVCANPSGNHCTTPPCYSYVWHWDTFKTAQYLGREKIGVEWINNSGVGKAAKPMVLDHFIMWSHHAWTDPISGRIVRMWKPFNGLQNYDPAAWTDDVDPAVFTSPPAKCKKGGAKIRINCDDDGNYHPKKSEGMQHLEALQQVAREAGDTVTLERVRAQYEAIMALQ
Ga0186088_110429	Ga0186088_1104291	F003183	GIGGHAWADENDKIDLVDCEVVSPPNATNMSTVHWPLYPKKFTVLPVDGRPGYSDTLIGWKTDPFCFAFFPQNDSIPPLCYRSQDSTGKWYDAYNESTRSDYNIKLTGLFSVFPNITASIMQVDWQMWIVNHLWVVDQCVCANPSGNHCTTPPCYSYVWHWDTFKTAQYLGREKIGVEWINNSGVGKAAKPMVLDHFIMWSHHAWTDPISGRIVRMWKPFNGLQNYDPAAWTDDVDPAVFTSPPAKCKKGGAKIRINCDDDGNYHPKKSEGMQHLEALQQVAREAGDTVTLERVRAQYEAIMALQ
Ga0186088_111688	Ga0186088_1116881	F024007	AIVVALVLLVAALCTAFFGAVALYASADIVLTGEQKQKYVRARRLARLLSGWANVGNAVVHALLIAMLLSDTARYKVFFPDEAEMPIGPVFLLIANAYVGRATLKGGGLQTAFAWNSFVAVAGSLIPIVWPKFLDVGLATWPYLAIFLWLGIWAFESTAFFFSAVAFSLKDAHAIKAV
Ga0186088_116824	Ga0186088_1168241	F016763	KPSLSESHQQAMGGGEVNYVHEAEIWRQQLKNEVEVAATWGDNWGFLTGREPPPARGFSQKVAKYAYGQGKWSVKSVRVPDDTEEGVSAAESEQNARKMMSTLSYDTKPVAPVKPCDAKGVRAVSNDVDGVESREAALLMRSHRLQSLGDACLTDGLNPGEKYRAPVLDSHEYGWRVPMKGNGGRSPTPPPVAFPHASGRPSPTHDRDACGG
Ga0186088_118707	Ga0186088_1187071	F054537	ARSARLSSEMVAPVTLLVGAAVAFTAPPTLVQQSQVSARFAPVEMNTKYTVAAGLAKKKNPKTGDSLSLKGYKVGMRAPNTAKSSGTTQGEQSLWDKVFGGGK