3300017164: Metatranscriptome of marine eukaryotic communities from unknown location in H/2 medium with NH4Cl, at 23 C, 35 psu salinity and 289 ?mol photons light - Guillardia theta CCMP 2712 (MMETSP0046_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017164
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211835 | Ga0186123
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in H/2 medium with NH4Cl, at 23 C, 35 psu salinity and 289 ?mol photons light - Guillardia theta CCMP 2712 (MMETSP0046_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38485448
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	9
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	7
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	4
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Hanusia → Hanusia phi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F011850	Metagenome / Metatranscriptome	286	Y
F014152	Metatranscriptome	265	N
F019282	Metagenome / Metatranscriptome	230	Y
F019841	Metagenome / Metatranscriptome	227	Y
F020015	Metagenome / Metatranscriptome	226	N
F021541	Metagenome / Metatranscriptome	218	N
F023110	Metagenome / Metatranscriptome	211	Y
F026478	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F035324	Metagenome / Metatranscriptome	172	N
F054914	Metagenome / Metatranscriptome	139	N
F067806	Metagenome / Metatranscriptome	125	N
F082776	Metatranscriptome	113	N
F084315	Metagenome / Metatranscriptome	112	N
F087277	Metagenome / Metatranscriptome	110	N
F096687	Metagenome / Metatranscriptome	104	N
F101267	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186123_101719	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	3102
Ga0186123_105085	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	2064
Ga0186123_105182	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2049
Ga0186123_106272	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1858
Ga0186123_106605	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1810
Ga0186123_108207	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1582
Ga0186123_108256	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	1578
Ga0186123_108352	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1565
Ga0186123_110604	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1328
Ga0186123_110951	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1296
Ga0186123_111180	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1275
Ga0186123_111659	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1232
Ga0186123_111755	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1223
Ga0186123_112881	All Organisms → cellular organisms → Eukaryota	1126
Ga0186123_113702	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1062
Ga0186123_114009	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1039
Ga0186123_117001	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	818
Ga0186123_117792	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Hanusia → Hanusia phi	768
Ga0186123_119101	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	688
Ga0186123_120300	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	619
Ga0186123_121386	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	559
Ga0186123_121651	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	545
Ga0186123_121896	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	532
Ga0186123_122037	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186123_101719	Ga0186123_1017192	F067806	RMAGMKVGDMELGYGSFQVEGRSNWKRKAFLVAMGTAMTALMILLGLDQSHEISEPTRQTLSTQRLFAADNVAMNGGTSGVAASKGDASDFMNSADLGDYVDAIIGPAPSGLTEGGYKKRGSIAVSKIDAAGFYYLNVEGEPGHALECILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186123_105085	Ga0186123_1050852	F096687	MFEALYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186123_105182	Ga0186123_1051822	F023110	MMFKVLPIRSLDLAPWTWQSSWNSDMPSFFQGMPNGVYDNIYDDLDTSTVSYHTTEPVDPTEYQEHWLGDVIKIY
Ga0186123_106272	Ga0186123_1062721	F032673	MMYAGIAVLACMAVIGMAFVSYDQVTSTSSWSSGAQLVDQDEGFWDDGSVTLAQLNKQEMNEILAKAKSMSTDQLRAEVAQLEADKRTRRTSLASKVRKQSLVVRGGQEDVAGNPEGGIIENVPPTVVAPVPGPPDFNGASAIIARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQVQTGHIPRGIVGEFDIMTCRDLNNGEVQYFRIRYD
Ga0186123_106605	Ga0186123_1066051	F032673	MMYAGIAVLACMAVIGMAFVSYDQDEGFWDDGSVTLAQLNKQEMNEILAKAKSMSTDQLRAEVAQLEADKRTRRTSLASKVRKQSLVVRGGQEDVAGNPEGGIIENVPPTVVAPVPGPPDFNGASAIIARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQVQTGHIPRGIVGEFDIMTCRDLNNGEVQYFRIRYD
Ga0186123_108207	Ga0186123_1082071	F054914	VRERLSLVFALIAAALVSCIGIIAYAKHSNALAPVETFQMTKLGTEYQVASALMKHATDIQFDENAPVPEKLADLAKAAEDEMKIDAEVMAQRR
Ga0186123_108256	Ga0186123_1082562	F026478	ACLPKMRMDRRHTLALLLCTASLLVLLVSPALAAKPKRKKVSVDDEEVIKARDFALAEIIKLSDSYRDMKINKVISAETARSAFADGTNYFLKMELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDEDDKAKDEL
Ga0186123_108352	Ga0186123_1083523	F035324	GSPHVAGAMFQALAIFKDTNGLFIGDVSGAMHVCLAGEACGGTLLSNKSGGGSRTPYSHGVAGYFGLYGTGQFDGQSSGHDFYGTIYMPPTGFVNNCDGGRSHTYCDYRQQ
Ga0186123_110604	Ga0186123_1106041	F084315	QARSRAMAWRSYGTAEEGGGRITGGRKTAAVVAALSFTAVAAVLCVIALTQSQDKKSELVDEKLVLFKMEPPPEPWSPPANLWMFWGQSPNKRFGHSGDNIRHLVKLGRLAGGEYRDPHFLFNFDSQTFRDLSESCCTTMLVAPMKNDMPIYNAESNVAQRLRNYVANGNHIVFTGGSLVSIEFINRYFYYNIEPESSSGTFKGSGYGNWSPGPFRKLITTDLPWVYKLTPDTLYQDHTSVQSMALRSLPSGTSVIYMTPKSSPVFLIKFCQRLSERHGEPPIKTVPKDCWRHAARGYPCSCGTISYIGYDWHYDQDAADWDKVCELGRTC
Ga0186123_110951	Ga0186123_1109512	F101267	MVEADFLSLFFLFFVQPVVNRKQEVPPDFFQKCFMKGYLKTLPKKQKIWCMIHENNFYFMDNQDDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVADDEEKALEWYEAALKASSRRN
Ga0186123_111180	Ga0186123_1111801	F084315	QARSRAMAWRSYGTAEEGGGRITGGRKTAAVVAALSFTAVAAVLCVIALTQSQDKKSELVDEKLVLFKMEPPPEPWSPPANLWMFWGQSPNKRFGHSGDNIRHLVKLGRLAGGEYRDPHFLFNFDSQTFRDLSESCCTTMLVAPMKNDMPIYNAESNVAQRLRNYVANGNHIVFTGGSLVSIEFINRYFYYNIEPESSSGTFKGSGYGNWSPGPFRKLITTDLPWVYKLTPDTLYQDHTSVQSMALRSLPSGTSVIYMTPKSSPVFLIKFCQRLSERHGEPPIKTVPKDCWRHAARGYPCSCGTISYIGYDWHYDQDAADWDKVMLAAVEYQSDPDESTTFSPNCKQPPRVIEDPHAPKNPPMCGKL
Ga0186123_111659	Ga0186123_1116591	F010032	EGGAAAMMVTERSLNTASCSLALVMMCMAVWHMQNPSHFGRRSALAQTPAQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVVFLGNYVAVQFMNDVYGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRVEQASIETYAVKSRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186123_111755	Ga0186123_1117552	F101267	MGCCSSRAPGQHEWQANVPGSYKQNPVPVVNRKQEVPPDFFQKCFMKGYLKTLPKKQKIWCMIHENNFYFMDNQDDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVADDEEKALEWYEAALKASSRRN
Ga0186123_112881	Ga0186123_1128812	F014152	NEREHNSVSRQIAFTLAISALALTVCCALIASADLKGNRVALYGLGSGEEQDADNSMVTTFETFAGQDEYMEELLGDEYYQELFKEIADSEPISEAVDEVKVAVDEAKNEHKTLQMFAEGADAPLS
Ga0186123_113702	Ga0186123_1137022	F020015	QSSISGAIEGMAESYGAAAPMASMVLADKQKRRTLLKVSVFITATIVAVACGVLLAMEHRGNTDNQGALSGAYYAVTKPPAFNFNRFIRNAWFYTGRSSDGQEEGFIEKLARKHHYKLQIHHLQSFKDNEFRAALFSENIHCIVFPPLIHFPGVSELAKKDLRGYVSAGNNVVFIGSYEWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSLSRLEQPDGSIYSVKVDSIPMDGKCMFDTMGACVVFYVKYNLGTVCYIAFDYDTPYGIGHWDQILHAAMMM
Ga0186123_114009	Ga0186123_1140091	F087277	MLSPFERRARVSFLAVAAAAAAFALAIVVLESSSPAPYYGKPVTAPERWLEDGRASINMFRVARSDMQKKVLRGTQLPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFNPQYDLQVRLDAIHTALSQLAAQTGVYLTNPPVVQVDESVFDEAASDVSRFRKLVERIPEMHNAKYYWVVQYNIIRTELRKTSSMLTTVVNIAKHHFLEVADSIDSMRMNVEATHEG
Ga0186123_117001	Ga0186123_1170011	F082776	ALRVSSNVLLAMAIVSYGSLPHAAESPKKRSSSFLIGIAAASALLLVGVIALVARQDFEDPDGSVTLMNLNAQEAREMKARRQSLVVRGGQEDVAGNPEGGILENVPPTVVAPVPGPPDFNGASAIVARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLAGDFTGNTIYTGFKKIYTGKSQVQTGHVPRGIVGEFDIMTCRDLNNGEVQYFRIRY
Ga0186123_117792	Ga0186123_1177921	F011850	HIAESAQSLLAAVPNVPFVDEVTGEAQGFTAPKNHFASVIGLWALFALPVWSAAYKQAGCDTPSWFGVSQVSEDAPGIGLVAKAAPVYDGPSFREGLEYVLSFLWKPPILIAWRPRADLDRENMDPARDTVVSSLYKSLGGALDKTAIYDEEDQLLILSDIEEFPSTPLGERRFAIAEAAGWMTGNPSFGKSLIEFSEETRKGKKQAGTVTISAEELQRLRAEAAKMK
Ga0186123_119101	Ga0186123_1191011	F019282	MFALLAMTMLDDVNTINTWAEPHNANGVTPNTVIDSNDEPPGNNQQRMAVRGY
Ga0186123_120300	Ga0186123_1203001	F021541	LQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186123_121386	Ga0186123_1213861	F021541	MCAWQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186123_121651	Ga0186123_1216512	F021541	MFLFQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186123_121896	Ga0186123_1218961	F096687	MLEILYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186123_122037	Ga0186123_1220371	F019841	MAVAFDTGYAGSSGIQPQSWVNGNGTSYIYFGSGQFDGQGSGHDYMGTLYMPPTGYVNNCDGGRSHTYCDYRQE