3300017154: Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 467 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1389)

Overview

Basic Information

• IMG/M Taxon OID: 3300017154
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212327 | Ga0186615
• Sample Name: Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 467 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1389)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25128758
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	7
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean
• Coordinates
  • Lat. (^o): -39.0
  • Long. (^o): -176.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005668	Metagenome / Metatranscriptome	393	Y
F020015	Metagenome / Metatranscriptome	226	N
F025760	Metagenome / Metatranscriptome	200	Y
F026581	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F067806	Metagenome / Metatranscriptome	125	N
F078794	Metagenome / Metatranscriptome	116	N
F084315	Metagenome / Metatranscriptome	112	N
F087277	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186615_104030	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1214
Ga0186615_104740	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1138
Ga0186615_105725	All Organisms → Viruses → Predicted Viral	1050
Ga0186615_106888	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	965
Ga0186615_107013	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	957
Ga0186615_107118	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	951
Ga0186615_108294	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	880
Ga0186615_111153	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	740
Ga0186615_113793	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	637

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186615_104030	Ga0186615_1040301	F084315	RRGKAMAIQYGTVPAEAVKPSRRPAMLYAAVAASALSVLVVVACFAYTAPKQETPAELLTQDLVLFKMAPPPEPWSPPANLWMYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK
Ga0186615_104740	Ga0186615_1047402	F025760	MMFQIVPLSLLRDDPYSMYDTEKSGNWYKADEPWGAFLQTDGNPAVSIHPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGYGIY
Ga0186615_105725	Ga0186615_1057251	F026581	LFGGICVGPLRPAFECAVARMVAVYNTFGEVEAARPARDGFKKYAGALAGAWAVLFVATVMIIGTSDNQESALLQAPTQMLAFKEFEPERNVFEEFDADFTPEMVYEYDLANEADWSKINIASGVEGSEVTEGIPDPYAVYHGLTVPEAVYTNPPPYDTTVVEIGEKIFGEPFHEYTAEEEGEAVMGKEYEDTIFDKTLNSVPEPNPSRDWEVLDVLNEPNPNY
Ga0186615_106888	Ga0186615_1068882	F032673	RLSVVARTMVLLADYGSLSHEIERQPRSKVSAMVAGVALLSALALVGVVALNWDQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEMNKLVKKAPTMSLVTVNENTAANPDGAVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186615_107013	Ga0186615_1070131	F087277	SIVDMEASSPAPAPYSPPAQGRVGLTEVQRRARAAFVVVACLAGVFAVLVVVLGAPSQPNQGPISSSERWLEDGRASLNMFRVARTPMQKKALRGPELPHQVHYYSNVGDRLPVLGDEERETRQTYQELVQLGHTCVVMLRRAIWSVDPSVFNPQYELQVRLDAVHTALGQLAEQTGVYLTNPPVVKVDESVFDQAATDVSRFRKLVERIPEMHNAQYYWVVQYNIIRTELRKVSSQLTTVVNIAKHHFLEVADSIDSMRLNMEAIHQ
Ga0186615_107118	Ga0186615_1071181	F020015	AAAPVAALSHQKPKRSWAVRAAVVSTLALAAVACLVLFSGEKAGEHTNNALGGSYYAVTKPPAFNFNRFIQNAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGVSGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYIKYNLGTIVYIAFAYDTPYGIGHWDQILHAGMMM
Ga0186615_108294	Ga0186615_1082941	F032673	MIAGVAAVAALALVGFAAMVDQDDGSVALAALTQQEMQDMLVKADRMPTSELKAEVAQLEQGRTMSLVTVNDNTAGNPDGAVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSALTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTVRGYRNLMGDFTGNTVYTGFKKIYTGKSQLQTGHIPRGIVGEFDVMTCRDLGNGEVQYFRIRYD
Ga0186615_111153	Ga0186615_1111531	F067806	GMASTPPAMAVEDLGLSYGSKINSFEIERRSGWRVRTTAAALAVIAVALVALLAVSNDAPREVTRASLSVEAMNGGTSGAHSNGDASDFIDTADLGDYVDAIIGPAPSGLTEGGYKKRGSIAVSKVDASGFYYLNIQGEPGHALKTILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186615_111474	Ga0186615_1114741	F078794	LQTNYGAIEAGQAAPVNAGNRKAVIGVVVAAALGLCALAGVIVMQNQQPTELMAVRLPNGRLVEAVPVQALFGPGDLPQPIEDDGLPGGDAKVVPGSNVHLFEHFSPPQPYGMDNRRDPPYDTSFGGMGYGSDGR
Ga0186615_113793	Ga0186615_1137933	F005668	VLEDYAGTYRETRNAYLKAANQLKLATGPYKAARDAYVAATATYTKSLYE