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Sample 3300017149
3300017149: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 134 ?mol photons light - Emiliania huxleyi 379 (MMETSP0997)
Overview
Basic Information
IMG/M Taxon OID 3300017149 Open in IMG/M GOLD Reference Gs0128947 | Gp0212262 | Ga0186550 Sample Name Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 134 ?mol photons light - Emiliania huxleyi 379 (MMETSP0997) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 25360030 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota 1 All Organisms → cellular organisms → Eukaryota → Haptista 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 50.1669 Long. (o ) -4.2504 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F015173 Metatranscriptome 256 Y F050084 Metagenome / Metatranscriptome 145 Y F098706 Metagenome / Metatranscriptome 103 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186550_108250 All Organisms → cellular organisms → Eukaryota 1031 Open in IMG/M Ga0186550_108961 All Organisms → cellular organisms → Eukaryota → Haptista 978 Open in IMG/M Ga0186550_109520 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 936 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186550_108250 Ga0186550_1082501 F098706 RQSRPGTPLQIAHPSSAQTMLATSMLSLSANRAEVSTGNLRGDAGKFDNLKASWEKGLEIGDFKTKVAAKYDYNSNKDFLKEVSFSGDLVEGDSADDVSVSYELRRDFASKRSDVRLTASSQGTTLSAEYDTEDQLTEVAVQREVDLGDQKVDVQPSWMVKAKAARVKLMSGLNNGKDKVSAQFDYDVDGKEVGALEVGFTRQLKAGQTLAASYKPDKSDLEVSLQDDNFEDGATWTATANVPLESADANLLDAARVTLKRSWGW Ga0186550_108961 Ga0186550_1089611 F050084 VSPGCYKILAEDDDWITGVLTMAVGEKDLLHHHKDHLIYVLEGDGVTIYPGGDESAAMVVPLQVGAGIPAPMSAPPFAKHTLLNSGTVPLKMVFFEAKK Ga0186550_109520 Ga0186550_1095201 F015173 ILAASPSTYPPGVSMLNDTAAFNSTGVAEDQVTLVGLFNQLLALLFPIWPWEPFIVMPFALEILRAKRKTGLSVGFVTIFAAVFCLAHGVGFVQAIDTVFYGGSGICACALPGAPDDIDTKAMCNMMAIHIFLMLLMGVFFARIALSPSRRVPVGGLEAVYCSRAALFFVVGGVSQGIPYWAVTFQYPERFEEFMRADGFYSARGVTPGAVEFVSPLVWIVYGLYSYGELMSLVDSAGNTANDKASVGGALPPMV
