3300017145: Metatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater w/o silicate, in 29.4 psu salinity and 687 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0595)

Overview

Basic Information

• IMG/M Taxon OID: 3300017145
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212123 | Ga0186411
• Sample Name: Metatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater w/o silicate, in 29.4 psu salinity and 687 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0595)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32397230
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Irish Sea
• Coordinates
  • Lat. (^o): 54.085
  • Long. (^o): 4.77
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098706	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186411_110472	All Organisms → cellular organisms → Eukaryota	1219
Ga0186411_111816	All Organisms → cellular organisms → Eukaryota	1081
Ga0186411_113431	All Organisms → cellular organisms → Eukaryota	920

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186411_110472	Ga0186411_1104721	F098706	MVIISPLLCYQSVSIGDFKTLVKAKYDYNANRDFLKEVSISGDLIEAGNADDVGVGYELTRDFSNRNTNVRLTATSRGYSLSAEYDPNEQLREVGVSREVEVGDYKVDVQPTWLVKAKAARVKLISALNNGKDRVSAQFDYDVDGQQAKDVELGFERTLEEGKVLSASFRPDKSDLEVSLEDSTFESGATWTATANVALDSDPSNLLDAARVTLKRSWGW
Ga0186411_111816	Ga0186411_1118162	F098706	VSIGDFKTLVKAKYDYNANRDFLKEVSISGDLIEAGNADDVGVGYELTRDFSNRNTNVRLTATSRGYSLSAEYDPNEQLREVGVSREVEVGDYKVDVQPTWLVKAKAARVKLISALNNGKDRVSAQFDYDVDGQQAKDVELGFERTLEEGKVLSASFRPDKSDLEVSLEDSTFESGATWTATANVALDSDPSNLLDAARVTLKRSWGW
Ga0186411_113431	Ga0186411_1134311	F098706	CPLYQSVPSRSLAMLSVSFFALAANRAEVSTGNLRGENKFDNLKATWDKSVSIGDFKTLVKAKYDYNANRDFLKEVSISGDLIEAGNADDVGVGYELTRDFSNRNTNVRLTATSRGYSLSAEYDPNEQLREVGVSREVEVGDYKVDVQPTWLVKAKAARVKLISALNNGKDRVSAQFDYDVDGQQAKDVELGFERTLEEGKVLSASFRPDKSDLEVSLEDSTFESGATWTATANVALDSDPSNLLDAARVTLKRSWGW