3300017144: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 735 ?mol photons light - Hemiselmis rufescens PCC563 (MMETSP1357)

Overview

Basic Information

• IMG/M Taxon OID: 3300017144
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211887 | Ga0186175
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 735 ?mol photons light - Hemiselmis rufescens PCC563 (MMETSP1357)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31214218
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	8
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003766	Metagenome / Metatranscriptome	469	Y
F005668	Metagenome / Metatranscriptome	393	Y
F019841	Metagenome / Metatranscriptome	227	Y
F020015	Metagenome / Metatranscriptome	226	N
F025760	Metagenome / Metatranscriptome	200	Y
F026478	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F036560	Metagenome / Metatranscriptome	169	N
F087277	Metagenome / Metatranscriptome	110	N
F096687	Metagenome / Metatranscriptome	104	N
F097384	Metagenome / Metatranscriptome	104	N
F101267	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186175_105602	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1324
Ga0186175_107373	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1149
Ga0186175_107771	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1116
Ga0186175_112689	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	803
Ga0186175_113061	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	785
Ga0186175_113530	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	763
Ga0186175_114398	Not Available	725
Ga0186175_115709	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	670
Ga0186175_116971	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	621
Ga0186175_117894	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	589
Ga0186175_118453	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	570
Ga0186175_119148	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	547
Ga0186175_120187	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186175_105602	Ga0186175_1056021	F019841	MFQFLRSVDFDTGYAGSGGVGPQSWVNGNGNSYIYFGSGQFDGQGSGHDYYGTLFMPPTGSVNNCDGGRSHTYCDYRQQ
Ga0186175_107373	Ga0186175_1073731	F003766	SALPTNKAVALSPHQRTRRMPTWNAQTLAVSALTAYYMFYGVRAALGDESAVPDVRDGVKSTKLLYVQCLGYHMLMDVCFMIGVVVNDIAHVMMPAFVAAMLVVVYSQFIIDDLRGAAPAAAFALVFAFLVPGAPARNPMKWNLATGFFTFFGCIVLLVGIAIVVSGDDSAIPEQMKPLSLNQIKFIGTGELTLAAYIFGSILVGHAHAMQLFCVLFLCVAGALHWVIGDIAENPASIVFAMAHLCLWFVFRGKDEAKKQ
Ga0186175_107771	Ga0186175_1077711	F087277	LGNMAAPEGESLHRRRARMAMAGVCATAMALIAVICLLESGKKGAREPISGGERWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNIQVHLDAVHTALQQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKTSSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE
Ga0186175_112689	Ga0186175_1126891	F032673	LTLRGSMVSIADYGSVGASAPKAGRTNMRLLASVLALAAVALVAITTLATQDDGMSTLAAFNKQEMQNMLTKAKTMSTSQLQQEVNELEAEKQDGESMRTSQLVTVNQNTAANPEGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYA
Ga0186175_113061	Ga0186175_1130611	F020015	EELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVEHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMARLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186175_113530	Ga0186175_1135302	F036560	MPQKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186175_114398	Ga0186175_1143981	F005668	MFQLMFDLGEYATTYRATRDAYLKAANELKLATGPYKAARDAYVAGTAT
Ga0186175_115709	Ga0186175_1157091	F020015	AMGGAYYAVSKPPAFNFNRFIENAWIYDGRNADAGTEGFVEHMAKRHHYKLNIHRLNSLRDNEVRAALFSKSIHCIMFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFQLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDGSVYSAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFAYDTPYGVEHWDQVLHAAMMM
Ga0186175_116971	Ga0186175_1169711	F097384	SSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATIAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186175_117894	Ga0186175_1178941	F101267	RHRESTMGCCSSRPPGSHEWQSQVPGSYKQNPVPIVNKKKDLPPDFFIKCFMKGWLRTLPKKQRIWCMIHENNFYFMDSEDDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFMAEDEEKALEWYEASLKASSRRN
Ga0186175_118453	Ga0186175_1184531	F026478	EESNMAARRLLLALSLLLSLSLVADAAKPKRKTVSIEDEETVKARDFALSEIIKLSDSYRDLKFNKVMSAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGEGKKSE
Ga0186175_119148	Ga0186175_1191481	F025760	AYLQGEGNPAESKAEMLNMIAMPAMRSLYASPNGGRNDPYSMYDTRMGGNWYKADEPWGAYLQGEGNPAVTIHPYESDPSSGSFNPQAHTTWVPVDWSSWPNYNVHGYGVY
Ga0186175_120187	Ga0186175_1201871	F096687	AAKSSEEMIERLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR