3300017137: Metatranscriptome of marine eukaryotic communities from Baltic Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 4 C, 15 psu salinity and 708 ?mol photons light - Skeletonema marinoi SM1012Hels-07 (MMETSP0319)

Overview

Basic Information

• IMG/M Taxon OID: 3300017137
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212190 | Ga0186478
• Sample Name: Metatranscriptome of marine eukaryotic communities from Baltic Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 4 C, 15 psu salinity and 708 ?mol photons light - Skeletonema marinoi SM1012Hels-07 (MMETSP0319)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34250290
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 59.51
  • Long. (^o): 23.15
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017834	Metatranscriptome	238	Y
F034938	Metagenome / Metatranscriptome	173	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186478_110242	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1237
Ga0186478_111378	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1105
Ga0186478_111491	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1094
Ga0186478_111933	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1045
Ga0186478_112119	All Organisms → Viruses → Predicted Viral	1029
Ga0186478_113455	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	898
Ga0186478_116494	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	608

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186478_110242	Ga0186478_1102421	F034938	PQRHGGRCYLLHPRDIPLPFPFHNPKVTETATMMNAPFPNAQRMHYEGAASSSTGHRTMINEAIILPKISADDQVAQRDVEEESNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVSVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQTGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186478_111378	Ga0186478_1113781	F034938	QRTRYRTQHKKRPLSIDPPPPINNIIMMHYTTNNTTDGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186478_111491	Ga0186478_1114912	F034938	MANEAPANVIPIPNDEESVASNADKDMVKWRGNLVPREEAKALRHVFDDLKDHFGHQQPDPHVRANVTSFKHPGHGLMWHGNLDFTYQIEGEHCNLGYIGMDVCIDLIPKKCQKQGEPTLKDYGKTWVYVYTPQETLDKFIKYVKIGTGWGVSTDGTVHDPNRNLVAIEARLHHQTDQPKPSFWVAKNRDASIGDMSFSRIGSVQEVNETSAQQRVHRGIGIFSVSLEVEGTPNFEPTPGNRDDANLCFTLVSVRTWGITDCVAPIVHAPSKWF
Ga0186478_111933	Ga0186478_1119331	F034938	DLVASRALMMMHYKKNTYGAEVSYTTYPKMTAAPQPNVIRNNAADHNDLVASRDDEETVAAAATTMTQWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGRTWFSDLDFTYDIKGDQCNLAYIGMDVCVDLAPKLVHKHGQPMLKNYGKSWVYVYLPQLTFDKFKSYVKFGTGWDVSDEGTVFDPNRDTVAIEAKMHHESGQPKPSFWAAKEKEASAGDMSFSRIGTVQDVSSHSSQQRIHRGVGIFSVSMEIEGTANFKPSPRMGDEANLCFNLVSFRTWGTTDGVAPIVHAPRKWY
Ga0186478_112119	Ga0186478_1121191	F034938	NNPEHTLPALLVSQTSSQHHQTMTSITQSETNYASGHWQKKSMGSEAASVIPNIADQRGDHDEEETMVIWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGDVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGETWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKAKLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVDGTPNFKPSSHSGEVANLVFTLVSVRTWGITDCIAPIVHAPMM
Ga0186478_113455	Ga0186478_1134551	F034938	MMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDIYGDHCSLAYFGMDVCVDLTSKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVYDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASGGDICFSRMGSVQDVNALPHQQHVHRGVGIFSVTMEVEGTPNFQPTPREGEEANLSFTLVSVRTWGITDCVAPIVHSPPDKWS
Ga0186478_116494	Ga0186478_1164941	F017834	IMGKGRGIQTFDLTSNLTKKEGRTIRKTECMIQYHLARMPMYGAHESPQFMKANEMKENIKNIEAKAKQRWELGHV