Sample 3300017132

Overview

Basic Information
IMG/M Taxon OID	3300017132 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212328 \| Ga0186616
Sample Name	Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 418 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1091)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	24522857
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	10
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	South Pacific Ocean
Coordinates	Lat. (^o)	-39.0	Long. (^o)	-176.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F011850	Metagenome / Metatranscriptome	286	Y
F020015	Metagenome / Metatranscriptome	226	N
F025760	Metagenome / Metatranscriptome	200	Y
F026478	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F084315	Metagenome / Metatranscriptome	112	N
F087277	Metagenome / Metatranscriptome	110	N
F096687	Metagenome / Metatranscriptome	104	N
F101267	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

F011850

Metagenome / Metatranscriptome

286

F020015

Metagenome / Metatranscriptome

226

F025760

Metagenome / Metatranscriptome

200

F026478

Metagenome / Metatranscriptome

197

F032673

Metagenome / Metatranscriptome

179

F084315

Metagenome / Metatranscriptome

112

F087277

Metagenome / Metatranscriptome

110

F096687

Metagenome / Metatranscriptome

104

F101267

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186616_103721	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1270	Open in IMG/M
Ga0186616_104197	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1211	Open in IMG/M
Ga0186616_106775	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis	983	Open in IMG/M
Ga0186616_106932	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	973	Open in IMG/M
Ga0186616_107102	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	960	Open in IMG/M
Ga0186616_107537	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	928	Open in IMG/M
Ga0186616_110432	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	768	Open in IMG/M
Ga0186616_111997	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	696	Open in IMG/M
Ga0186616_111998	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	696	Open in IMG/M
Ga0186616_112155	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	689	Open in IMG/M
Ga0186616_112277	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	683	Open in IMG/M
Ga0186616_112448	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	676	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186616_103721

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

1270

Open in IMG/M

Ga0186616_104197

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

1211

Open in IMG/M

Ga0186616_106775

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis

983

Open in IMG/M

Ga0186616_106932

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

973

Open in IMG/M

Ga0186616_107102

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

960

Open in IMG/M

Ga0186616_107537

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

928

Open in IMG/M

Ga0186616_110432

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

768

Open in IMG/M

Ga0186616_111997

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

696

Open in IMG/M

Ga0186616_111998

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

696

Open in IMG/M

Ga0186616_112155

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

689

Open in IMG/M

Ga0186616_112277

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712

683

Open in IMG/M

Ga0186616_112448

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

676

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186616_103721	Ga0186616_1037211	F084315	VVVRYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK
Ga0186616_104197	Ga0186616_1041971	F084315	VRRGKAMAIQYGTVPAEAVKPSRRPAMLYAAVAASALSVLVVVACFAYTAPKQETPAELLTQDLVLFKMAPPPEPWSPPANLWMYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK
Ga0186616_106775	Ga0186616_1067751	F011850	KHPVAKVPHPSMARTAVVVACSLLLFAPSSHAFAPSGIARVGLPLKGNAVSARSARVTPAKMAMDPAHVSDIAQGAQTFLSSAIENVPFIDEVTGEPQGFTAPKNHFASVIGLWVLFALPVWSAAYKQAGCSTPDWFGVSQVSEDAPGIGLIAKASPEYAGPSFREGLEYVFSFFWKPPILIAWKPRADLDREAMDPARDTVVSSLYKGLGGALDKTAVYDEEDQLLILSDIVTFEETELGRRREKIAEESGWYTGNPSFGRSLIEYSEQTRKGKRDTGTVTISTEELAKLRAEAAKK
Ga0186616_106932	Ga0186616_1069321	F020015	MVYGAAAPVAALSHQKPKRSWAVRAAVVSTLALAAVACLVLFSGEKAGEHTNNALGGSYYAVTKPPAFNFNRFIQNAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGVSGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYIKYNLGTIVYIAFAYDTPYGIGHWDQILHAGMMM
Ga0186616_107102	Ga0186616_1071021	F032673	RLSVVARTMVLLADYGSLSHEIERQPRSKVSAMVAGVALLSALALVGVVALNWDQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEVNKLVKKAPTMSLVTVNENTAANPDGAVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186616_107537	Ga0186616_1075371	F087277	RMASIVDMEASSPAPAPYSPPAQGRVGLTEVQRRARAAFVVVACLAGVFAVLVVVLGAPSQPNQGPISSSERWLEDGRASLNMFRVARTPMQKKALRGPELPHQVHYYSNVGDRLPVLGDEERETRQTYQELVQLGHTCVVMLRRAIWSVDPSVFNPQYELQVRLDAVHTALGQLAEQTGVYLTNPPVVKVDESVFDQAATDVSRFRKLVERIPEMHNAQYYWVVQYNIIRTELRKVSSQLTTVVNIAKHHFLEVADSIDSMRLNMEAIHQ
Ga0186616_110432	Ga0186616_1104321	F025760	MYDTEKSGNWYKADEPWGAFLQTDGNPAVSIHPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGYGIY
Ga0186616_111997	Ga0186616_1119971	F026478	MSRPIFLLTVGLCLLAVVHSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDDDKKDEL
Ga0186616_111998	Ga0186616_1119981	F026478	LCRRIRLCWIVRLGGLTMSRPIFLLTVGLCLLAVVHSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDDDKKDEL
Ga0186616_112155	Ga0186616_1121551	F101267	MKCYMKGYLRTLPKKQRIWCMIHENNLYFMDSAEDTMPKKFLCFDGCLVNLKGKELEIQTPEIMEGAVPRATYKFMAEGEDVAMEWYEASLKASSRRN
Ga0186616_112277	Ga0186616_1122771	F096687	VHSPVVFVGGSQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186616_112448	Ga0186616_1124481	F032673	VALAALTQQEMQDMLVKADRMPTSELKAEVAQLEQGRTMSLVTVNDNTAGNPDGAVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSALTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTVRGYRNLMGDFTGNTVYTGFKKIYTGKSQLQTGHIPRGIVGEFDVMTCRDLGNGEVQYFRIRYD

Scaffold ID

Protein ID

Family

Sequence

Ga0186616_103721

Ga0186616_1037211

F084315

VVVRYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK

Ga0186616_104197

Ga0186616_1041971

F084315

VRRGKAMAIQYGTVPAEAVKPSRRPAMLYAAVAASALSVLVVVACFAYTAPKQETPAELLTQDLVLFKMAPPPEPWSPPANLWMYWGESPNKRFGHSGDNLRHLVKMGRLAGGEYRDPHFLFTYTAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNYAQRLRNYVANGNHMVFTGGSLVSIEFINRYFYYNIEPIDAAGIFKGSGYGNYSPGPFRKLIDDDLPWQYKLTPDTLFQDYTSVQSMALRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVEDPHAPRAPPICK

Ga0186616_106775

Ga0186616_1067751

F011850

KHPVAKVPHPSMARTAVVVACSLLLFAPSSHAFAPSGIARVGLPLKGNAVSARSARVTPAKMAMDPAHVSDIAQGAQTFLSSAIENVPFIDEVTGEPQGFTAPKNHFASVIGLWVLFALPVWSAAYKQAGCSTPDWFGVSQVSEDAPGIGLIAKASPEYAGPSFREGLEYVFSFFWKPPILIAWKPRADLDREAMDPARDTVVSSLYKGLGGALDKTAVYDEEDQLLILSDIVTFEETELGRRREKIAEESGWYTGNPSFGRSLIEYSEQTRKGKRDTGTVTISTEELAKLRAEAAKK

Ga0186616_106932

Ga0186616_1069321

F020015

MVYGAAAPVAALSHQKPKRSWAVRAAVVSTLALAAVACLVLFSGEKAGEHTNNALGGSYYAVTKPPAFNFNRFIQNAWFYDGRSANPDMEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSENVHCIVFPPLNYFPGVSGLAQKDLRGYVSSGNNVVFVGSYEWLSVMNDVFGFQLMSDYKDGPYFRNDRNVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGKCMFDTMNACVVFYIKYNLGTIVYIAFAYDTPYGIGHWDQILHAGMMM

Ga0186616_107102

Ga0186616_1071021

F032673

RLSVVARTMVLLADYGSLSHEIERQPRSKVSAMVAGVALLSALALVGVVALNWDQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEVNKLVKKAPTMSLVTVNENTAANPDGAVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD

Ga0186616_107537

Ga0186616_1075371

F087277

RMASIVDMEASSPAPAPYSPPAQGRVGLTEVQRRARAAFVVVACLAGVFAVLVVVLGAPSQPNQGPISSSERWLEDGRASLNMFRVARTPMQKKALRGPELPHQVHYYSNVGDRLPVLGDEERETRQTYQELVQLGHTCVVMLRRAIWSVDPSVFNPQYELQVRLDAVHTALGQLAEQTGVYLTNPPVVKVDESVFDQAATDVSRFRKLVERIPEMHNAQYYWVVQYNIIRTELRKVSSQLTTVVNIAKHHFLEVADSIDSMRLNMEAIHQ

Ga0186616_110432

Ga0186616_1104321

F025760

MYDTEKSGNWYKADEPWGAFLQTDGNPAVSIHPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGYGIY

Ga0186616_111997

Ga0186616_1119971

F026478

MSRPIFLLTVGLCLLAVVHSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDDDKKDEL

Ga0186616_111998

Ga0186616_1119981

F026478

LCRRIRLCWIVRLGGLTMSRPIFLLTVGLCLLAVVHSAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINKVLSAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDDDKKDEL

Ga0186616_112155

Ga0186616_1121551

F101267

MKCYMKGYLRTLPKKQRIWCMIHENNLYFMDSAEDTMPKKFLCFDGCLVNLKGKELEIQTPEIMEGAVPRATYKFMAEGEDVAMEWYEASLKASSRRN

Ga0186616_112277

Ga0186616_1122771

F096687

VHSPVVFVGGSQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR

Ga0186616_112448

Ga0186616_1124481

F032673

VALAALTQQEMQDMLVKADRMPTSELKAEVAQLEQGRTMSLVTVNDNTAGNPDGAVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSALTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTVRGYRNLMGDFTGNTVYTGFKKIYTGKSQLQTGHIPRGIVGEFDVMTCRDLGNGEVQYFRIRYD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017132: Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 418 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1091)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences