3300017126: Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 733 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1156)

Overview

Basic Information

• IMG/M Taxon OID: 3300017126
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211923 | Ga0186211
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 733 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1156)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34641523
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Eukaryota	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009840	Metagenome / Metatranscriptome	312	Y
F015173	Metatranscriptome	256	Y
F021038	Metagenome / Metatranscriptome	220	Y
F034449	Metagenome / Metatranscriptome	174	N
F096482	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186211_100391	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	3379
Ga0186211_101828	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2222
Ga0186211_113470	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	949
Ga0186211_117356	All Organisms → cellular organisms → Eukaryota	778
Ga0186211_117684	Not Available	765

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186211_100391	Ga0186211_1003913	F015173	MLNDTAAFNSTGVAEDQVTLVGLFNQLLALLFPIWPWEPFIVMPFALEILRAKRKTGLSVGFVTIFAAVFCLAHGVGFVQAIDTVFYGGSGICACALPGAPDDIDTKAMCNMMAIHIFLMLLMGVFFARIALSPSRRVPVGGLEAVYCSRAALFFVVGGVSQGIPYWAVTFQYPERFEEFMRADGFYSARGITPGAVEFVSPLVWIVYGLYSYGELMSLVDSAGNTANDKASVGGALPPM
Ga0186211_101828	Ga0186211_1018283	F034449	MLTLKLAALALLASSTAALKVEKPVVKPVLKLRGGVSAGDVITGGALFLSASVGLPALAGGSDALFMINYPGFDWAGYQAKWTAESKSYLDTMTRFFGGALLLAGALQYYAKDVMAAKPYYAILTVTQLVFAGLQIFFAAPTAAMPSVHYVYAGMNAVLAVAGAMAMI
Ga0186211_113470	Ga0186211_1134701	F096482	RRRGPSPPLLGVARSDSHKGTTRLTMLLLVFVSAQSFQPLLRPPSPLPAARLSPPSCMARWTTQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL
Ga0186211_117356	Ga0186211_1173561	F021038	MRMMSIQNFGFFVMYFAIWLATPAADVCAESRFAEGFMALTCFLVSFLCIGMGFGGYVDDGFTFPFYWIAHAVPAVGGYTTCTFLIPMARFSETGEACATLAPVVGSAVQAVYIVHAGLYWCYVCNMVSVTYFSFLKPTFGLKFKASICVALLALIEAIVFGAMAQYGVFAASPLPSASKKLFGMF
Ga0186211_117684	Ga0186211_1176841	F009840	MRALSWLLLCSFRGTSALQPSRPGVSRRPLLQHALALGVLAPGAAAAAAEKKPSLKEVVAQLDAGTPKEERNAHGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP