3300017125: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in K/2 Ian medium, 22 C, 35 psu salinity and 213 ?mol photons light - unclassified eukaryote RCC 2339 (MMETSP1310)

Overview

Basic Information

• IMG/M Taxon OID: 3300017125
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212071 | Ga0186359
• Sample Name: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in K/2 Ian medium, 22 C, 35 psu salinity and 213 ?mol photons light - unclassified eukaryote RCC 2339 (MMETSP1310)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27823655
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 34.35
  • Long. (^o): 130.0833333
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040999	Metagenome / Metatranscriptome	160	Y
F078765	Metagenome / Metatranscriptome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186359_103436	All Organisms → cellular organisms → Eukaryota → Sar	1932
Ga0186359_109816	Not Available	1013

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186359_103436	Ga0186359_1034362	F040999	MATPSVRILEHRVKFFDDRPEEVNDCRTDDNLKKWLKGKGAAAVVVQGTSQQESITFKVEGAPVKGLTRTNKTSKFYVTVSTESIVMGDFEVGEHTHTFDKQDIEVLAAARANWSLVTTFHDADGKEFAKRESSFKIVAPKA
Ga0186359_109816	Ga0186359_1098161	F078765	NAELHAARAGCVGYEIGGAQYQAGLIRGFDPSAILALGLPCNMAAHSLQRSQYVNGLAELPPDVRSALFDTTAQLVRAHYGREAGDAVPWHPYNFHAGNYWNPETGYSPQDETTAELLRAGCHPIPNWIFSPHFPLAALREWTGRQVELFAREGQTLHCLRIKNPGQGVAWTATAVWEHVSTMLAVFRERGLPTPIVYIHNHDFAGTGGATGAELFRLAHGAGYRYLVVDAAYRKNGTHNDNTVLLSALGLSADERLALGRYNRHQQAIEGLLCRFGSRGSHMTPWDSDWAGGTEGSDIRIAKEYHLDVGKINAAKEVASEVFPLERAVTPFSEYKL