3300017122: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 464 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1363)

Overview

Basic Information

• IMG/M Taxon OID: 3300017122
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211818 | Ga0186106
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 464 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1363)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33217589
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088199	Metatranscriptome	109	N
F096482	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186106_120438	Not Available	643
Ga0186106_120589	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	638
Ga0186106_121867	Not Available	592

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186106_120438	Ga0186106_1204381	F088199	HMRCLVLFELVVGAVSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQASAS
Ga0186106_120589	Ga0186106_1205891	F096482	LNMLIVVFLSAQSFQPLLRPASPLPAARLSPPSCMARWTQQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL
Ga0186106_121867	Ga0186106_1218671	F088199	LVLAEIHMRCLVLFALVVGAVSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQFGVEVPGNFAAFNVRPRNAKKHLLVPSM