3300017105: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 581 ?mol photons light - Chaetoceros dichaeta CCMP 1751 (MMETSP1447)

Overview

Basic Information

• IMG/M Taxon OID: 3300017105
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212227 | Ga0186515
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 581 ?mol photons light - Chaetoceros dichaeta CCMP 1751 (MMETSP1447)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23790345
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): -49.9
  • Long. (^o): 11.55
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059360	Metagenome / Metatranscriptome	134	Y
F087993	Metatranscriptome	109	Y
F098600	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186515_104997	Not Available	1408
Ga0186515_109415	Not Available	973
Ga0186515_109455	Not Available	970
Ga0186515_110360	Not Available	895
Ga0186515_111664	Not Available	787
Ga0186515_112662	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	715
Ga0186515_113467	Not Available	659

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186515_104997	Ga0186515_1049971	F059360	MTLFTEVLVPANLVPAAAVIREGQALSEITGRKGSVDCIVSYLLNSKAQL
Ga0186515_109415	Ga0186515_1094151	F087993	MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRALGWWSRVKPAALSFVKRVAVRGVKALAGLAIGGINSL
Ga0186515_109455	Ga0186515_1094551	F087993	MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRALFWSWAKRAALTFVKTVKKVPQAVVNFYGDYKNGKLLRRL
Ga0186515_110360	Ga0186515_1103601	F087993	MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRDLHNWSRIIAGALSFFK
Ga0186515_111664	Ga0186515_1116641	F087993	MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRDLHNWSRIIAGALSFFKXKAEEAARAIANLAIGFVENTVRVFKW
Ga0186515_112662	Ga0186515_1126621	F098600	MFTKSFALAWVAVYFCRVVLITNGIIYAISGTSYYRQSYDGYELREAGNSTLYTFPVLRPVIKDAVIEDQFDGLLILAPFMGAAYICVAFTSLAAAFFFRNIEAAITLLVQAALFSMLGCIVRPHLPEDVYNEGERDNVQNAQMVAVITGWIGAVXXXXGCLTDHSGVVTAEGSDAH
Ga0186515_113467	Ga0186515_1134671	F087993	MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRDLGLWSRFIAAALGFVKQKALDAARGLKNLIFKPV