3300017101: Metatranscriptome of marine eukaryotic communities from unknown location in Artificial seawater, at 27 C, 30 psu salinity and 596 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0326_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017101
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211915 | Ga0186203
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in Artificial seawater, at 27 C, 30 psu salinity and 596 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0326_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20627981
• Sequencing Scaffolds: 16
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	6
All Organisms → cellular organisms → Eukaryota → Sar	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000076	Metatranscriptome	2620	Y
F000085	Metagenome / Metatranscriptome	2467	Y
F000462	Metagenome / Metatranscriptome	1107	Y
F000631	Metagenome / Metatranscriptome	971	Y
F008230	Metatranscriptome	336	Y
F011080	Metatranscriptome	295	Y
F015603	Metagenome / Metatranscriptome	253	Y
F016530	Metatranscriptome	246	Y
F018723	Metagenome / Metatranscriptome	233	Y
F020362	Metatranscriptome	224	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186203_103363	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1012
Ga0186203_103443	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1004
Ga0186203_104339	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	933
Ga0186203_104687	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	906
Ga0186203_104982	All Organisms → cellular organisms → Eukaryota → Sar	886
Ga0186203_105072	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	880
Ga0186203_105827	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	835
Ga0186203_106386	All Organisms → cellular organisms → Eukaryota → Sar	806
Ga0186203_106640	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	793
Ga0186203_106887	All Organisms → cellular organisms → Eukaryota → Sar	780

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186203_101435	Ga0186203_1014351	F000462	LTSVVQLRLRARFVTMKRFVLPALLACVPAMAESTVESVTPVQKVIQLLDNMLAKGKEEKHAEQVQFAAFKQFCDDTTVEKKRSIKEAEEKIEVLKADISKFTADAAKLTKEIAGHDEDISVWTGDKKAATSVRQLEKTDYDALHKDYSESVDALQRAIAVLKKQAYDRKQTSLAQLKDLQQLTLIPKEAKSAIDAFLQQDQDAPEGLEVSAPEAAGYEFQSHGIIEVLEKLEEKFIAERTDLEKAEMNSKHAYDMLMQDLTAQVEQASADRSSKAEIKAKKLQAKADAQGDLTDTTTTKEADEKYLSDLTGTCTQKASDFEMRQQLRAEELEAIQKAIEILSSSAVSGHAETYLPSLAQKASALAQLRAAGSAPQQLQQQRAADYLAVQGRELKSHVLSALATKITADPFAKVKKMI
Ga0186203_103363	Ga0186203_1033631	F016530	EGSCLNPWPPNQFLIRWSRQAFRREVLQLLRFLRXXXXWDMLGLSLPDGISEKSLSVKNGQVVLLTAGDWFSSQTSLEVDKRDAYRQQWQYEAEARLARVEAKKSPLEKSGEGLTAQKFSWSKDGQKPFEWRKLYHALVGGVGGLPDGGIITETVFNPTVMRMYTDHRVMGNIVLPGVSHVSLMAATGSVGFPNPGGISSEWHMSIKETLFERPYIVNSGAELIAAIQSGADPSQVGGMTPVGVPVVYCRATTVTKERGQIKPTIDWAK
Ga0186203_103443	Ga0186203_1034431	F011080	PCPTHFCLDLVCHLLFIIIMPSALKSRQGKPSVAEMKADLQRLRKPTAKCLEEIFQRYHQACLSTSPQMKEIEVKEPDVNWKALVMSLPPPHNKIVLGVGIRKILLAETECIYQGMYRFHVVRLDGSRAMFDFREAYNDAYHNYKDKSFKHDVELALRAAVLHQLVQHKEMLSKDSQMELVSHISGVVLPWEKAVVQHFPVTFQMLVDSFLNEHQLHMEEIKLDFCEDHGYRIKDQDLLDKWRIFHRSKAHYRVISTEEAMEQDHL
Ga0186203_103749	Ga0186203_1037492	F090462	LRPVDISRVLRSFAKCGIHHGGLCKAVGDEVCTRYRDKTAVFKAEDLVEIGWALCALQHYHEGVFRLMFKALEKSETIASDSLLQLYELHLALETEHKDAYSNYRPETHLIEALEDHYKDNRKDERRCSEKHRNDVASALKSLVEGSVHVNHRTSLALLVDVVALRKRSSSDGFVHVDLDSNVTQVRSLDQDDPAQASVVTEGFVALRRRILQKSGLRLVTVKESEWRDLDDSKEKRRHLRGLLTNLGDVLQ
Ga0186203_104339	Ga0186203_1043391	F075673	VKFRGSLLAGLYAGSGGLWVRNFFWNITFFEWKRFFHNSIDQLPEWAPSLYCRHIMWLRGLDVKDQANILTFEAATLATYLTFFNMAGDNVKTKMSVDPQRYPTFIGTCKDIWASHGVVGFARGSLFKGIYLILGATVAIGIQERLSAIMASFVGR
Ga0186203_104687	Ga0186203_1046871	F082720	LHAFHSETQNMGIASPDFXXXXXXXXVTEKEVHSNGVQRYLVQFMCGELSKADGVGFVFSPKLPCAKNIQRIVSIFVNQSGRICMRIFADIIRASAYVKPLELGDWVEMAIDLEGRVATFNIWANTENGWPDMVGKPVSTAVFPYGQRLGKLDPEHRPEGAKTGKSSHKPIKLNVGHLACVVKNVGVTINLAS
Ga0186203_104982	Ga0186203_1049821	F015603	YFFRSYNTTTMNQADQYRKLIINLEPCKGVVYLFVRKTRQCYPNPYSCITGLGTELEKRGTDCEWTSFRSEIDRSKDGTPTFFEVPLSSTKYYLSIYATESSAYTLTVLADIGAFPRPGAAGKIEASQLRELQVQLSWSPASFIPTGISNVKKYWVYSSMLLDNDDRSNMAVFLRPDKIMNTVCGLTNNTDREYTTVLPSSCGTTCNVTVDGVITDKRYVFNVIVESARGYKMAYAGLIMKTDWEVVRQATSDKTLKVIGAVSGSVLGMVVIIYFLMLKLYG
Ga0186203_105072	Ga0186203_1050721	F020362	GNSEDRGDPGDWAVSVCQLSCPCSEGASAPPPANAGAPYPECVEQGSVLRHAGSHAIFVDVSSFGSTGCWQSDCKHSDKFNADDVGICARACAQIDECLWWTFGAQEDANKCFLRKSDGGREGAGGWLSAAKTCAPPALPDYFLALTAANVLLPCDAGKSEACPDMARAVTTWKFAIKHLKKATAGKVDPNTIAFINQISDDTDAFAAQMSEDNFPVVVGNNRQVFYALQSWMDNQPKPSIDLNDASLPNPVRGALCGVSSCHDKVA
Ga0186203_105827	Ga0186203_1058271	F074355	MSRALYLPNRRRGHKYVTLDDIALEYACVINLSDTVETLKQKISAQKFCPVQNIKFSIMGKDIPNGCQLKEHLDLHTRFLLTWASPLA
Ga0186203_106386	Ga0186203_1063861	F035313	QQRALVVSYQLLLVLTASCRVFPKVVDMADVPAGYVNGCGHEFDPKEAEKSGKLTKDDPIQEHYKKGGFFGSITGAFGDKKTMYCHHMTTDCEPAVRAAKRQNIDCKTAEEVWNVIGRKPCCGRFAYDSKSGKLKCGAVVKKDHDNTCNGDTCLFVASGLDCPVPTWAHK
Ga0186203_106640	Ga0186203_1066401	F026799	MGGSCCSCEDEAGSYVENDKRPRRESRKRHPNEFTIIIDRRNGDGLGIDATPEKTGTLEIKNVTPGGLVDRWNKSLGESSREIVKPGMRVVEVNGRYNSTMQLIAACREIEVLHITLIPPGAL
Ga0186203_106726	Ga0186203_1067261	F000631	VQGSQDYYRTAAVELFKHPLHTMDNATFEQEFECWFASMCTTKCGGLPSLAESRKKDLTATCSSVEADWLKVWNFFTQEEVKWFKTNYPAAEVEGSEEGTAIYYKQAMQTAKEINKKEMLCLTLFTIDDECVKWPYIRLSK
Ga0186203_106887	Ga0186203_1068871	F036711	MPVWQNVNLKQKAIFEIIQREPVETLPYYLNDEELDFFVRGLSMGPHAKTYLPQIVEREKRPIYICRGYAPPTYSRVVKLRYYGPDPLLKDAGSNWSAGEPGELLEVVIGWRWLYAYWDGPLVDEVDGAWNEKQWPSIANPSWSWTSVKIVTPPYYVPEDGRPWRASNPALLPVSVPKGKGRGKGGSGSGMLDTTASEANPKVGCRTEDEWSQNKK
Ga0186203_107660	Ga0186203_1076601	F018723	TKNLAKTEQSAAQRSFDLAMASKADPKAKAKGKEPLCEIFPVKDVFPLFQDRKTKQLPLNDVPYVLRACGLTIYGEEEAKIKAEVEKVDGMGKPVSLSTLQDWMENNQASYTRTHEEAYNALWTLCQEGIIGEVKDKSQTIIIPHLRHLVSEVGDKIKPDTFDKVIKGDNTITSDAINLDDFINYLKK
Ga0186203_107772	Ga0186203_1077721	F000631	IWSLISRSASSYPQLTMQLFLSTFLAVVAGLIYAGEAALLRAKTAQEPDTACGKGFENLVQGSQDYYRTAAVELFKHPLHTMDNATFEQEFECWFASMCTTKCGGLPSLAESRKKDLTATCSSVEADWLKVWNFFTQEEVKWFKTNYPAAEVEGSEEGTAIYYKQAMQTAKEINKKEMLCLTLFTIDDECVKWPYIRLSK
Ga0186203_108391	Ga0186203_1083911	F031106	AAAGTSTSRTGPLTPRQQTLRSQLELPLLNTYPIPPNATADESEEERKKKLLILYQEFALDLHTGMYLTQLTSNRDYSDIHCQLMEDMVTLKLDQSNGRIIEFPLTNVSKVYRIVKNDDRWYTAGTSPPPNAHMNTEQIVVVEFMRRKLAFVFKELQVSQRFLICMELLIRRAQQKQALRSLTPTFPPQQTQGRQCPTPRQVHDAAMTGRPPPSAGK
Ga0186203_108522	Ga0186203_1085221	F000085	ETSSLAHTPKNSLKPQKIRKNTGKMAGLLKVVVASAPLLLLGANGQPWPACQQQNTVIRGSAGQALFTNLQGYGATIGCFLDDCLNSDKFVASEIESCAKVCHSIPECKFWVWGVEEGEQKCWFRTGDAGRESGEGWVSAPKTCVPPGTQTLILGNSECWAEGFGYENCCEAKFGPNGNSQCWDGVYNYDRCCFPKDEL
Ga0186203_108776	Ga0186203_1087761	F000076	AVHLLPSLLDPTLKRWGEPITASSLHGAADAMAEEEGQEVIFTENAAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVVAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0186203_108993	Ga0186203_1089931	F008230	PGSWLLLDFLFNHTVRSPCKPAPKPPRFVKMAMRMTRRLLSVPAVKDFATYEAMKTSGTTMMVGFFNAHFSTAGKMYQSQFESMAASYPKAKFYTCDIDDVPMAAYDAEVTEVPSIVMLPLGLKPDGSPYDKSDMVVVAPELARFDQVLPRAKSVIDGTTVIENPEGQKPWEFDPATGTTMPPHQ
Ga0186203_109954	Ga0186203_1099541	F000085	RALFANMQGFGAVVGCFQDDCQNSDKFVASSIESCTKVCLSIPECEFWVWGQEEGEQKCWLRLGDDGREAGEGWVSGARTCHPPNQQAQVMGNVECWIDGFDYDTCCDPKFGPSGNTQCWDGVFNYERCCFPRDEL
Ga0186203_110125	Ga0186203_1101251	F076865	FFGNGVINGKTEDFVNDITPLLEYEKENKKQKEFLVQPYVLKPNGQVFDEIRNFFIEGEWQYSVFTHGTDYEGFWEQPPGALKEACKALAIRAYNEVKKVAKWEGKPMDTLLNRIDIGIVPDKSLKLGYKIFVNEIEPQMTTWLGRYCPFEIADKMAAACVNQASKAIRLSLDKGRKMPTKKENIKQLLDILDERLA
Ga0186203_111807	Ga0186203_1118071	F079552	HFDFLSHPPLLASFPWIRVEEMKFAAVVLLALVADAAAGTLKAKTAEKYPVYSPGAAGSVETCEGITCQPVDCKPPFKYQSPEESGTCCPLCWADSVKVPEDRSWAKGMTGGVGMNNNADPILCRDVVCLAPDCPEYDQFFDGRCCTKCKSSKAVTPADLAKDFKEMK