3300017098: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 99 ?mol photons light - Pseudo-nitzschia pungens cf. pungens (MMETSP1061)

Overview

Basic Information

• IMG/M Taxon OID: 3300017098
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212013 | Ga0186301
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 99 ?mol photons light - Pseudo-nitzschia pungens cf. pungens (MMETSP1061)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30766453
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia multistriata	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 47.6901
  • Long. (^o): -122.40041
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023270	Metagenome / Metatranscriptome	210	Y
F045520	Metagenome / Metatranscriptome	152	Y
F069652	Metagenome / Metatranscriptome	123	Y
F075635	Metatranscriptome	118	Y
F080841	Metagenome / Metatranscriptome	114	Y
F098604	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186301_108387	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia multistriata	1396
Ga0186301_108833	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia	1328
Ga0186301_110328	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae	1115
Ga0186301_113145	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	724

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186301_100448	Ga0186301_1004482	F069652	MPLTRHSLILFALFGTIQACNMGAAMTECMAEAFSKDLNARPVALLVITAGKPDDSDALDECLRGTVQHCAENYETCPISVTFVHIGDDADAEEYLKYLDEGIQAECAANGETFDLVDTVKDEDIKAAMAEIKGTKSSGKNGALLGAIAGAALGVGGMYLVNKQQAKKRTEGWNGKWKVTYDGEEITTLDIVDDKEGNLTIDGFPDSEPTTGTYTTDDEEEFAISFVDPNGDWEIEGTVEDEHSIVWSDGTRWDEIPPEGASFGALAAAGIGGAAVAGATGYLLDKKFFNKAAKKDQCDYFILMDRSASMAVIDTSVGL
Ga0186301_108387	Ga0186301_1083872	F080841	MCKISCASLLAAIFFVIGNALTITYYVKEYQRSHFDYDDYTNLDPGYIEVEWGFRITNRPLYLSAGILNVIAWFFLMFPIVHLSWILSQGGKKWIGLHIAIGVLILTGSLTEWISHVLYIGASMTSELMAREFNLDNWITSNSEDQIGWRTLEMTHIVTYGFISAIGAIEWLILSVVMVLIHISVKRWRRNVDSTTFSACWNALGLFVALMSMLEFTAEVLRLSGFRSFAKIAFWYSSANRLILIPTWLVLLGSRLPYASLKLNQQAHMREQEPLVGTT
Ga0186301_108833	Ga0186301_1088332	F023270	MISMPTSPSASSWKSSAMAIFGMLQLLLATSAGFVQARNAHFTMEFIPTFKNGLPHKCRPEEVKIMEKFLGDILAEETGMVEHSVQYLDNMYDPAEHHNSEASAASFHLKRHHFSKVRGFDFTFDCPTQNDHYACPDKDWCHVLCLDESVKPGHESLTQQASKLKEKLHRHSKTLEGPYNVKCLGHTAELDFHLLVSVSP
Ga0186301_110328	Ga0186301_1103281	F045520	MAFNKLFKHIEGLIQNDDEVNDSVPCKADILTVRECRKGGKACDDLGLDLLRCMAQFKVDATEKVRTTIGVSKYNEYLKEMEDKHGKEKAAEIINEPSEQLKDIEAYQVLHRIANNTHPKGAPKTKDDLMNWTYADQVRLEMGEGEWWDAVKIIGYEFGLAKTDALFGLKKENDMIHSAQSRLIPGFEDRKASALAAAKKIEDSVKEAAPGGKTAADFKAAFDDLYPSKDDLEAALK
Ga0186301_112393	Ga0186301_1123931	F098604	RNPTISNGNITCSGYNLNNTVPIPIIPSANLLAFTMAPLIHDVDFSLASHENTIEQPKTIFAPLHENSIATSRSVSFGVMVATYEVMNLEDYTSEEKKATWFDSNDMRRMKESARSEAKLAESGLLVQGDDVSLRGLESRTRNGLKRKRRNRMNAYAAVFFEIDCQDQEGFIDEELIADAYFTHTEHCSVTAQMIGKRDEKEAMEIFQTQKKDFFGKNFYDTLVGLSTTEGFLASSAA
Ga0186301_113145	Ga0186301_1131452	F075635	METSKTNEVPMADANYVAADAQPKRGHIFCGYCCDVRTACLVVNMIGLAFAGLGLVSLAPKMDRPGFQRFGIFMAAFVLGIIANSLGIYGALKFKQIFVLIAGVWFALEALLSLILFLDFVGCALGLLFLYPHIMLFKEIQDGIMTKENYVNEKSCCGSL