Sample 3300017059

Overview

Basic Information
IMG/M Taxon OID	3300017059 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212360 \| Ga0186648
Sample Name	Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 201 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0006_2)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	31211271
Sequencing Scaffolds	9
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Lake Texoma, Oklahoma
Coordinates	Lat. (^o)	33.98	Long. (^o)	-96.67	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008291	Metagenome / Metatranscriptome	335	Y
F008555	Metatranscriptome	331	Y
F012191	Metagenome / Metatranscriptome	282	Y
F012945	Metagenome / Metatranscriptome	275	Y
F017834	Metatranscriptome	238	Y
F043734	Metagenome / Metatranscriptome	155	Y
F079481	Metatranscriptome	115	N
F080844	Metagenome / Metatranscriptome	114	N
F084921	Metatranscriptome	111	Y
F094737	Metatranscriptome	105	N
F098438	Metagenome / Metatranscriptome	103	Y

Family

Category

Number of Sequences

3D Structure?

F008291

Metagenome / Metatranscriptome

335

F008555

Metatranscriptome

331

F012191

Metagenome / Metatranscriptome

282

F012945

Metagenome / Metatranscriptome

275

F017834

Metatranscriptome

238

F043734

Metagenome / Metatranscriptome

155

F079481

Metatranscriptome

115

F080844

Metagenome / Metatranscriptome

114

F084921

Metatranscriptome

111

F094737

Metatranscriptome

105

F098438

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186648_109179	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1117	Open in IMG/M
Ga0186648_109489	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1093	Open in IMG/M
Ga0186648_111039	Not Available	985	Open in IMG/M
Ga0186648_112025	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	924	Open in IMG/M
Ga0186648_113662	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	834	Open in IMG/M
Ga0186648_113722	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	831	Open in IMG/M
Ga0186648_115777	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	725	Open in IMG/M
Ga0186648_117640	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	634	Open in IMG/M
Ga0186648_120341	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	512	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186648_109179

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae

1117

Open in IMG/M

Ga0186648_109489

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1093

Open in IMG/M

Ga0186648_111039

Not Available

985

Open in IMG/M

Ga0186648_112025

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

924

Open in IMG/M

Ga0186648_113662

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

834

Open in IMG/M

Ga0186648_113722

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus

831

Open in IMG/M

Ga0186648_115777

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina

725

Open in IMG/M

Ga0186648_117640

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

634

Open in IMG/M

Ga0186648_120341

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

512

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186648_102370	Ga0186648_1023703	F084921	MLNTNQLLQLVVDHPNRSNLDLRFLSLIWEAFLRWCRDQFATKVGIKVLGMGEFCYRKDTIGNLEFFNPMFILSESYARAHGLLDRRPKTHSVETESIELDMPAIATLATELVGELIGKDVVDGALRDVIDRIGEVCAEPDKYGIITXXXXDLLSSSARTSRSNSCSETRKEERIDRTREPP
Ga0186648_109179	Ga0186648_1091791	F098438	KDAAQSRLGINLQGPPARWGWKDDQLFEIEPKRAPMACIFLIDRTFEGFLQNVVDAVVNVYDKYLEPDDLVGYYGLGEKWIFNVQEKGKNSDKLREQIVNSVEKAGDPHVYSSITKCVDCLATEVDDRYSKWLVVLTDTADFECANEKGVFDKGSKERAEKAVDGVIAKMKTLTGLNLVIIDACGIANFDAKHMLWPTWHALSQKLTDEVGNGNTGLNIEATNVSEIDEAFEKVAGAMAGGGAAG
Ga0186648_109489	Ga0186648_1094891	F079481	DRPFVSARLATASGRYTRTMGTAAGFFGLTYQGPVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPDGKLKHDQIVELLQFFYRQRAEGPTRSGSYLHSYPQSEAAYMSSMFSGPDATLGFHELLSHLMEAQANFAEPTAPVEYNSNSVFRNDLNKHTRKMLDPQQQFRKPLLTSQEVGWAVKQTAASGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATKQLIQFGGFGMGV
Ga0186648_111039	Ga0186648_1110391	F012191	MSALAKTMDRAAARGMGAGMGGGGHANNPVFMFQADWAKNKHKGFIFVFGIFGLGCLIPYKLVSFAQSKAGVQW
Ga0186648_112025	Ga0186648_1120251	F012945	VTYTDSVICYKELIEKEDAARRGWAKKYAGNWDAKWRPAEPLEATGASLSKTEMPPTVPKAATQYPALFRDTVGDEGLAGGTPKRFGGRWDVTANLSPVSHEGKPVRVVKKGPHDQYCDIGYNCWKMAGKQRTHNYGLQGVFERELWTNTPGELALVWDYKGELSKGREQAPGNADEQSTSRHPR
Ga0186648_113662	Ga0186648_1136622	F008291	PFLGMDIADLRATRIASDSLRNDVRNLQRVVASAPAAANVEPESKVWAFAGHQGRRVLVDKRAPQKPRMDNVTYTASSWKVGLRSTDVHPVTGQHSYDTGNLYRTVHWKEQGFGLNGRFTDALANAGMWRHDGLNTSKTRSKAVPDPAQWGTPKESLTFGM
Ga0186648_113722	Ga0186648_1137221	F008555	AAVLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNXXXXYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0186648_115777	Ga0186648_1157771	F094737	SSVRYQMVLSDSEAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW
Ga0186648_115976	Ga0186648_1159761	F080844	TKAAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186648_117640	Ga0186648_1176401	F017834	SVRPQSHMGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV
Ga0186648_120341	Ga0186648_1203411	F043734	ECTSWRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

Scaffold ID

Protein ID

Family

Sequence

Ga0186648_102370

Ga0186648_1023703

F084921

MLNTNQLLQLVVDHPNRSNLDLRFLSLIWEAFLRWCRDQFATKVGIKVLGMGEFCYRKDTIGNLEFFNPMFILSESYARAHGLLDRRPKTHSVETESIELDMPAIATLATELVGELIGKDVVDGALRDVIDRIGEVCAEPDKYGIITXXXXDLLSSSARTSRSNSCSETRKEERIDRTREPP

Ga0186648_109179

Ga0186648_1091791

F098438

KDAAQSRLGINLQGPPARWGWKDDQLFEIEPKRAPMACIFLIDRTFEGFLQNVVDAVVNVYDKYLEPDDLVGYYGLGEKWIFNVQEKGKNSDKLREQIVNSVEKAGDPHVYSSITKCVDCLATEVDDRYSKWLVVLTDTADFECANEKGVFDKGSKERAEKAVDGVIAKMKTLTGLNLVIIDACGIANFDAKHMLWPTWHALSQKLTDEVGNGNTGLNIEATNVSEIDEAFEKVAGAMAGGGAAG

Ga0186648_109489

Ga0186648_1094891

F079481

DRPFVSARLATASGRYTRTMGTAAGFFGLTYQGPVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPDGKLKHDQIVELLQFFYRQRAEGPTRSGSYLHSYPQSEAAYMSSMFSGPDATLGFHELLSHLMEAQANFAEPTAPVEYNSNSVFRNDLNKHTRKMLDPQQQFRKPLLTSQEVGWAVKQTAASGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATKQLIQFGGFGMGV

Ga0186648_111039

Ga0186648_1110391

F012191

MSALAKTMDRAAARGMGAGMGGGGHANNPVFMFQADWAKNKHKGFIFVFGIFGLGCLIPYKLVSFAQSKAGVQW

Ga0186648_112025

Ga0186648_1120251

F012945

VTYTDSVICYKELIEKEDAARRGWAKKYAGNWDAKWRPAEPLEATGASLSKTEMPPTVPKAATQYPALFRDTVGDEGLAGGTPKRFGGRWDVTANLSPVSHEGKPVRVVKKGPHDQYCDIGYNCWKMAGKQRTHNYGLQGVFERELWTNTPGELALVWDYKGELSKGREQAPGNADEQSTSRHPR

Ga0186648_113662

Ga0186648_1136622

F008291

PFLGMDIADLRATRIASDSLRNDVRNLQRVVASAPAAANVEPESKVWAFAGHQGRRVLVDKRAPQKPRMDNVTYTASSWKVGLRSTDVHPVTGQHSYDTGNLYRTVHWKEQGFGLNGRFTDALANAGMWRHDGLNTSKTRSKAVPDPAQWGTPKESLTFGM

Ga0186648_113722

Ga0186648_1137221

F008555

AAVLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNXXXXYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW

Ga0186648_115777

Ga0186648_1157771

F094737

SSVRYQMVLSDSEAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW

Ga0186648_115976

Ga0186648_1159761

F080844

TKAAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET

Ga0186648_117640

Ga0186648_1176401

F017834

SVRPQSHMGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV

Ga0186648_120341

Ga0186648_1203411

F043734

ECTSWRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017059: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 201 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0006_2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences