3300017055: Metatranscriptome of coastal eukaryotic communities from North Sea in IMR 1/2 medium with 10nM Se, no NCl and Si, 16 C, 25 psu salinity and 660 ?mol photons light - Prymnesium polylepis UIO037 (MMETSP0286)

Overview

Basic Information

• IMG/M Taxon OID: 3300017055
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212386 | Ga0186674
• Sample Name: Metatranscriptome of coastal eukaryotic communities from North Sea in IMR 1/2 medium with 10nM Se, no NCl and Si, 16 C, 25 psu salinity and 660 ?mol photons light - Prymnesium polylepis UIO037 (MMETSP0286)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23473013
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1
All Organisms → cellular organisms → Eukaryota → Haptista	2
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Sea
• Coordinates
  • Lat. (^o): 59.0
  • Long. (^o): 10.45
  • Alt. (m): N/A
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003183	Metatranscriptome	502	Y
F003766	Metagenome / Metatranscriptome	469	Y
F006207	Metagenome / Metatranscriptome	378	Y
F008013	Metagenome / Metatranscriptome	340	Y
F010978	Metagenome / Metatranscriptome	296	Y
F012191	Metagenome / Metatranscriptome	282	Y
F012945	Metagenome / Metatranscriptome	275	Y
F024007	Metagenome / Metatranscriptome	207	Y
F032134	Metagenome / Metatranscriptome	180	Y
F035176	Metatranscriptome	172	Y
F043734	Metagenome / Metatranscriptome	155	Y
F054537	Metatranscriptome	139	Y
F071920	Metagenome / Metatranscriptome	121	Y
F079481	Metatranscriptome	115	N
F088199	Metatranscriptome	109	N
F098438	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186674_101896	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1614
Ga0186674_104711	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1140
Ga0186674_104762	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1134
Ga0186674_106078	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → prasinophyte incertae sedis → Pycnococcaceae → Pycnococcus → Pycnococcus provasolii	1015
Ga0186674_107415	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	915
Ga0186674_107637	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	903
Ga0186674_107688	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	899
Ga0186674_107699	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	899
Ga0186674_109954	All Organisms → cellular organisms → Eukaryota → Haptista	772
Ga0186674_112153	Not Available	670
Ga0186674_114489	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	580
Ga0186674_114805	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	569
Ga0186674_115425	All Organisms → cellular organisms → Eukaryota → Haptista	549
Ga0186674_116531	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186674_101896	Ga0186674_1018961	F006207	RVHNLGAGPPSWCDWDCAGHCLALMQEGTGLYLWDVGMPEQLAASEGNQPLRLCPSITVATSFCMWSRVHSQLAIGTQGGKVIVFNKKEGVMQLHDRKGKHGAAVTCGDWLFDNRLGLASGTRVKISKPVPEAGAQWESYSKFKLSGMLSRVPRKFKDAGAPKLLSFSLKFPPFVAVCIGDNYMLVFGTSGHHANEDVGLTFPDDYGPITGFQWLEDDVVLVALANGYVTSVDFGAMVRMRQQHGLPECVKATGTTKVFNEYLKCLTYSTASQKIACVGDRGFKVIQRKEEELEVLADISLDYELTLGNCLETIRWDSEGKAVCICATNGYMWTYDILTQ
Ga0186674_104711	Ga0186674_1047111	F003766	MPTWNAPTLAVSALIAYQVFYGVRGALGDDSAVPNALKPATLTFVQGLGYHMLMDACFMIGIVVNDIAHVMMPSFVAAMLVVVYSQFSIGDLPGAAPAGALALVFTWLARGAPARKPMKWNLATVFYSLQGLLVFLVGIAMLFGDDAVIPEQMKPMDSLKVKFIGTTELTLSAYLFGSILAGHAQAIQPFCALFMLVALVLHYVIGDFEGCPLIVVLAIAHLCLGLFWKGKEEAKKL
Ga0186674_104762	Ga0186674_1047621	F079481	SPHALRSSRSCNLPHTMGTAAGFFGITYQGAVNGLASNTLSIFNMDHPDDRAWLKLCFDFVAPGGKLKHDQIVEFLQFFYRHRAEGPTQSGSFLYAYPENEAQFLSSLFSSADAELVFDDMLNNCMEAQANFAEPAAPLEYNSNNVLRTDMVKHTRKMLDPQQQFRKPLLTSQEVGWDLTKDSMPGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATRKLLEFGGFGMGV
Ga0186674_106078	Ga0186674_1060782	F008013	FPAMAHQVENIGDKEGKAVFLEPYPNCKPCGAVEGYISPFTVSPGCYKILTEDDDWITGMLTMKVGEKDEFHHHKDHLIYVLEGDGVTIYPGGKEEDAMVVPLAPFAGIPAPMAAPPFASHTLKNTGTKELKMLFFEAKK
Ga0186674_106238	Ga0186674_1062381	F010978	LVAAAIALFANSAVDRTDDGLPWEITLTGFCVFAVVFSAIYAKRTEVALSVICIILSCVPTYFVHNYEVPCSNWELGSKFSLTSSKSTVLDGVFRDEPNASRFDKFLPLGVSMYTMSIFDPGIAIQCNTTEIYHSSIELKDAAGTKTHDYLLLSSPRKVKDKTTAIMLLARVPVSIDLWPEGVEDHSYNLQEASNIIAPPIVVGELLKLDKGPAIQHLQKKHHLRPFLLDVYRVDYIFG
Ga0186674_107415	Ga0186674_1074151	F012945	QAGLVRVGAGAAVSAAGMSNTKLTYTDSVICYKELIEKEDATRRDWAGKYGKSWNSKWRPIEPFEPNGASDSKMELPPTVPPAARKYPQLYRDSVGDEGLAGGTPKRYGGRWDVTSNLTPINHGDKPPRVVKKGPHDLYCDIGYNCWNMAGKARTANYGLMGTFEREFWTNTPGELALVWDYKGEGIGNAAVLAELDKEVAQS
Ga0186674_107637	Ga0186674_1076371	F003183	WADENDKIDLVDCEVVSPPNATNMSTVHWPLYPKKFTVLPVDGRPGYSDTLIGWKTDPFCFAFFPQNDSIPPLCYRSQDSTGKWYDAYNESTRSDYNIKLTGLFSVFPNITASIMQVDWQMWIVNHLWVVDQCVCANPSGNHCTTPPCYSYVWHWDTFKTAQYLGREKIGVEWINNSGVGKAAKPMVLDHFIMWSHHAWTDPISGRIVRMWKPFNGLQNYDPAAWTDDVDPAVFTSPPAKCKKGGAKIRINCDDDGNYHPKKSEGMQHLEALQQVAREAGDTVTLERVRAQYEAIMALQ
Ga0186674_107688	Ga0186674_1076881	F035176	LCHRPFVVPSRATMGVLPAAADKPKILFYGAMMAIQNYGFYEAYYGLYPQIPSFVGSVDCGTLRFWVGFFALDCFIESFCCLWMAMGGYVSSNFWFAFGWILHLIVALPYCVSTVAIPISMYADEGKVCRKAMGPAEDVLSAVYWVHCSLFMCYVWMMLSITYYSFLKPTFITKTKIGDS
Ga0186674_107699	Ga0186674_1076991	F071920	NNSKCPAYWELQAPHVATDFDFDRDIPGYYYELAFHDLTQRPLCPSAPRCITSEKAVMNHSDGVRYVNDTWNLQCFGHPYPQTLLFNQTAANGYLCGYVPTTLIPFLPKSVVAGLVFPDTIVDFKSGPDGWLLEYQCVEAFGSVRFVGINFYSKLKTEAAFEEMYAAAMARGLGLXXXXMNSKPWGLSRVNHTDCPLEPHVRQLV
Ga0186674_108820	Ga0186674_1088201	F032134	ENIYGKTYGHSSHMAIAGNHQRFQWSEQTPQERFESSSRQEMLDFGHPAKIEDGHVTYAHETTNPAHANYKHPPPITNNFDYHIPGYGGFVPGVQSKNMYAKTQYVATKEALQQYTQRMGRYEEQKPKTAPPGPLTAEGAELGMLQFKPNGFLYQKRMQGEWNNGMLGARNYSAVRLAEGRHWKANLYKTTSKELHSGHANEDVPFQFSKGPAPTFENMDHALKHKSVYLGFYAL
Ga0186674_109954	Ga0186674_1099541	F088199	VTACELRALPSAMQKLLLLIVSLMGASALVVGPLAPAHVARAASPTMACNGGKGGKGGKTPPKDKWLFRPKVNKLVQEADSAEGVKDILLTASTEKLLLKMNWKYRRSAGHKIRKRAAQFGVEVPHEFAAFHVRPRNTPKHLLVPSIAE
Ga0186674_112153	Ga0186674_1121531	F054537	GDEHQTARSARLSSEMVAPVTLLVGAAVAFTAPPTLVQQSQVSARFAPVEMNTKYTVAAGLAKKKNPKTGDSLSLKGYKVGMRAPNTAKSSGTTQGEQSLWDKVFGGGK
Ga0186674_114489	Ga0186674_1144891	F098438	QKVVDAVVNVYDKYLEPDDLVGYYGLGDKWIFEPQEKGKHAKKLREQIVGSVEKAGDPHVYSSIAKCVDVLSTQVDDKYSKWLVVLTDTADFECANEKGVFDKGSKERAEKAVDGVVKQMRALSGLNLVVIDASGIANFDAKHMLWPTWHKLSQKLTDDVGDANTGLNIEATNADEIDEAFEKVAGAMSGGAG
Ga0186674_114805	Ga0186674_1148051	F043734	MFTFFRAKQLGFPAARWGGAVGVIGFFLLYEDLPQLIMQTQYGVFPGWDGVAREFGLMAKKTEEE
Ga0186674_115425	Ga0186674_1154251	F024007	VALYASADIVLTGEQKQKYVRARRLARLLSGWANVGNAVVHALLIAMLLSDTARYKVFFPDEAEMPIGPVFLLIANAYVGRATLKGGGLQTAFAWNSFVAVAGSLIPIVWPKFLDVGLATWPYLAIFLWLGIWAFESTAFFFSAVAFSLKDAHAIKAV
Ga0186674_116531	Ga0186674_1165311	F012191	PQLGLKVMALSRTSALATTMQRAASRGMGAGMGGGGHANNPVFMFQADWAKNKWKGAVFCFGIFSLGCFVPYKCAAFAQKKAGVAW