3300017049: Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 277 ?mol photons light - Hemiselmis andersenii CCMP 439 (MMETSP1041)

Overview

Basic Information

• IMG/M Taxon OID: 3300017049
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211828 | Ga0186116
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 277 ?mol photons light - Hemiselmis andersenii CCMP 439 (MMETSP1041)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26150127
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	6
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005668	Metagenome / Metatranscriptome	393	Y
F020015	Metagenome / Metatranscriptome	226	N
F032673	Metagenome / Metatranscriptome	179	Y
F082776	Metatranscriptome	113	N
F087277	Metagenome / Metatranscriptome	110	N
F096687	Metagenome / Metatranscriptome	104	N
F101267	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186116_108378	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	985
Ga0186116_109770	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	886
Ga0186116_110166	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	861
Ga0186116_110355	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	851
Ga0186116_111233	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	799
Ga0186116_113433	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	686
Ga0186116_114633	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	630
Ga0186116_117708	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186116_108378	Ga0186116_1083781	F020015	AVWELMVSPSPYSAVVSPDIGDKRRTQMMQAAVCTALALAAVVCVGLVVHERGSGAVGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVQHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMNRLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186116_109770	Ga0186116_1097701	F101267	VNKKKELPPDFFIKCFMKGWLRTLPKKQRIWCMIHENNFYFMDSEEDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFMAEDEEKALEWYEASLKASSRRN
Ga0186116_110166	Ga0186116_1101661	F032673	MVSIADYGSVGASAPKTPRTNMKLLASVLALAAVALVTITTLATQDDGMATLAAFNKQEMQNMLTKAKTMSTSQLQQEVNELEAEKQDGESMRTSQLVTVNENTAANPEGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYA
Ga0186116_110355	Ga0186116_1103551	F087277	HIFIMAAPEGESIHRRRARMAMAGVCATAMALVAVICLLESGKQEAREPISGGEQWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNIQVHLDAVHTALQQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKASSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE
Ga0186116_111233	Ga0186116_1112331	F082776	GRFIVMVATYGSMPEGAPARQPRSGRRAALISIAALAMVGCIALTTLSARAEDPTGMDTLAAWKAQESARPTMLVSENDAANPSGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYNGKSQVQTGHVPRGIVGEFDIMTCRDLGNGEVQYFRIRYS
Ga0186116_113433	Ga0186116_1134331	F020015	VTKPPAFNFNRFIENAWIYDGRSADSGTEGFIEHMAKRHHYKLNIHRLQSLRDNEVRAALFSKSIHCIIFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDASVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFDYDTPYGIEHWDQILHAAMMM
Ga0186116_114633	Ga0186116_1146331	F096687	EKVCPGGSRNLIMIESLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186116_117708	Ga0186116_1177081	F005668	MIAKLFDLEDYAGTYRETRNAYLKAANQLKLATGPYKAARDAYVAATAT