Sample 3300017037

Overview

Basic Information
IMG/M Taxon OID	3300017037 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212362 \| Ga0186650
Sample Name	Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 199 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP1083)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	31538811
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	2
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Lake Texoma, Oklahoma
Coordinates	Lat. (^o)	33.98	Long. (^o)	-96.67	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F005228	Metagenome / Metatranscriptome	407	Y
F008291	Metagenome / Metatranscriptome	335	Y
F008555	Metatranscriptome	331	Y
F012945	Metagenome / Metatranscriptome	275	Y
F019484	Metagenome / Metatranscriptome	229	Y
F043734	Metagenome / Metatranscriptome	155	Y
F057823	Metatranscriptome	135	N
F067275	Metatranscriptome	125	N
F071920	Metagenome / Metatranscriptome	121	Y
F079481	Metatranscriptome	115	N
F080828	Metatranscriptome	114	Y
F080844	Metagenome / Metatranscriptome	114	N
F094737	Metatranscriptome	105	N

Family

Category

Number of Sequences

3D Structure?

F005228

Metagenome / Metatranscriptome

407

F008291

Metagenome / Metatranscriptome

335

F008555

Metatranscriptome

331

F012945

Metagenome / Metatranscriptome

275

F019484

Metagenome / Metatranscriptome

229

F043734

Metagenome / Metatranscriptome

155

F057823

Metatranscriptome

135

F067275

Metatranscriptome

125

F071920

Metagenome / Metatranscriptome

121

F079481

Metatranscriptome

115

F080828

Metatranscriptome

114

F080844

Metagenome / Metatranscriptome

114

F094737

Metatranscriptome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186650_104509	Not Available	1756	Open in IMG/M
Ga0186650_105442	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1598	Open in IMG/M
Ga0186650_110018	All Organisms → cellular organisms → Eukaryota → Haptista	1089	Open in IMG/M
Ga0186650_110810	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1028	Open in IMG/M
Ga0186650_111692	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	961	Open in IMG/M
Ga0186650_112437	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	909	Open in IMG/M
Ga0186650_112933	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	878	Open in IMG/M
Ga0186650_113375	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	848	Open in IMG/M
Ga0186650_114221	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	795	Open in IMG/M
Ga0186650_115285	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	729	Open in IMG/M
Ga0186650_115757	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	700	Open in IMG/M
Ga0186650_116028	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	683	Open in IMG/M
Ga0186650_119327	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	503	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186650_104509

Not Available

1756

Open in IMG/M

Ga0186650_105442

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus

1598

Open in IMG/M

Ga0186650_110018

All Organisms → cellular organisms → Eukaryota → Haptista

1089

Open in IMG/M

Ga0186650_110810

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1028

Open in IMG/M

Ga0186650_111692

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus

961

Open in IMG/M

Ga0186650_112437

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

909

Open in IMG/M

Ga0186650_112933

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

878

Open in IMG/M

Ga0186650_113375

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica

848

Open in IMG/M

Ga0186650_114221

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

795

Open in IMG/M

Ga0186650_115285

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

729

Open in IMG/M

Ga0186650_115757

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae

700

Open in IMG/M

Ga0186650_116028

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina

683

Open in IMG/M

Ga0186650_119327

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

503

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186650_104509	Ga0186650_1045092	F019484	SNIIYFLTILGGSLKKIAKKITTRVPISRNVYTNASIILFN
Ga0186650_105442	Ga0186650_1054421	F008555	VLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0186650_110018	Ga0186650_1100181	F080828	MVALALLLAMTAKLPFDAATDHIDHGARALAQMPQEVEPTYISPPCRVDCWVPDYCEPKEFRYKLCKLRLRGRKPKGDEFQCGPNEFCEEVDCLEKCWLPTQCTCASEGKFAGRMMCSEDCYAHPSTQWGLCVPLPEGQEEPEHDEPLKTHFHFYTQHELLYNSKLHIDEDSPMRRVPTPTSKEEL
Ga0186650_110810	Ga0186650_1108101	F079481	PFVSARLATASGRYTRTMGTAAGFFGLTYQGPVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPDGKLKHDQIVELLQFFYRQRAEGPTRSGSYLHSYPQSEAAYMSSMFSGPDATLGFHELLSHLMEAQANFAEPTAPVEYNSNSVFRNDLNKHTRKMLDPQQQFRKPLLTSQEVGWAVKQTAASGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATKQLIQFGGFGMGV
Ga0186650_111692	Ga0186650_1116921	F008555	LIPAAVLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0186650_112437	Ga0186650_1124371	F067275	VCTTATDHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA
Ga0186650_112933	Ga0186650_1129332	F012945	VTYTDSVICYKELIEKEDAARRGWAKKYAGNWDAKWRPAEPLEATGASLSKTEMPPTVPKAATQYPALFRDTVGDEGLAGGTPKRFGGRWDVTANLNPVSHEGKPVRVVKKGPHDQYCDIGYNCWKMAGKQRTHNYGLQGVFERELWTNTPGELALVWDYKGELSKGREQAPGNADEQSTSRHPR
Ga0186650_113375	Ga0186650_1133751	F057823	RSRPFLFSPMATQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM
Ga0186650_114221	Ga0186650_1142212	F008291	FLGMDIADLRATRIASDSLRNDVRNLQRVVASAPAAANVEPESKVWAFAGHQGRRVLVDKRAPQKPRMDNVTYTASSWKVGLRSTDVHPVTGQHSYDTGNLYRTVHWKEQGFGLNGRFTDALANAGMWRHDGLNTSKTRSKAVPDPAQWGTPKESLTFGM
Ga0186650_115285	Ga0186650_1152851	F005228	MDQPKQIVAAKYQQTTSRATPDAVARELRKLPAASGPLDSRKRALHDLAHALAYVQEQHKTKVVEACTKDDAAGLLLSLLDDIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAAMLRLPPSGQRISAMELLMDTLLNTADSESVLFYAVAGLYNLSNDGSFADLAARKPGLLQKLEQ
Ga0186650_115757	Ga0186650_1157571	F071920	GMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMHQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA
Ga0186650_116028	Ga0186650_1160281	F094737	VRYQMVLSDSQAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW
Ga0186650_116076	Ga0186650_1160761	F080844	MAAPETPGYVVGAVTTRLTVTVPXXXXGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186650_119327	Ga0186650_1193271	F043734	CTSRRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

Scaffold ID

Protein ID

Family

Sequence

Ga0186650_104509

Ga0186650_1045092

F019484

SNIIYFLTILGGSLKKIAKKITTRVPISRNVYTNASIILFN

Ga0186650_105442

Ga0186650_1054421

F008555

VLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW

Ga0186650_110018

Ga0186650_1100181

F080828

MVALALLLAMTAKLPFDAATDHIDHGARALAQMPQEVEPTYISPPCRVDCWVPDYCEPKEFRYKLCKLRLRGRKPKGDEFQCGPNEFCEEVDCLEKCWLPTQCTCASEGKFAGRMMCSEDCYAHPSTQWGLCVPLPEGQEEPEHDEPLKTHFHFYTQHELLYNSKLHIDEDSPMRRVPTPTSKEEL

Ga0186650_110810

Ga0186650_1108101

F079481

PFVSARLATASGRYTRTMGTAAGFFGLTYQGPVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPDGKLKHDQIVELLQFFYRQRAEGPTRSGSYLHSYPQSEAAYMSSMFSGPDATLGFHELLSHLMEAQANFAEPTAPVEYNSNSVFRNDLNKHTRKMLDPQQQFRKPLLTSQEVGWAVKQTAASGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATKQLIQFGGFGMGV

Ga0186650_111692

Ga0186650_1116921

F008555

LIPAAVLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW

Ga0186650_112437

Ga0186650_1124371

F067275

VCTTATDHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA

Ga0186650_112933

Ga0186650_1129332

F012945

VTYTDSVICYKELIEKEDAARRGWAKKYAGNWDAKWRPAEPLEATGASLSKTEMPPTVPKAATQYPALFRDTVGDEGLAGGTPKRFGGRWDVTANLNPVSHEGKPVRVVKKGPHDQYCDIGYNCWKMAGKQRTHNYGLQGVFERELWTNTPGELALVWDYKGELSKGREQAPGNADEQSTSRHPR

Ga0186650_113375

Ga0186650_1133751

F057823

RSRPFLFSPMATQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM

Ga0186650_114221

Ga0186650_1142212

F008291

FLGMDIADLRATRIASDSLRNDVRNLQRVVASAPAAANVEPESKVWAFAGHQGRRVLVDKRAPQKPRMDNVTYTASSWKVGLRSTDVHPVTGQHSYDTGNLYRTVHWKEQGFGLNGRFTDALANAGMWRHDGLNTSKTRSKAVPDPAQWGTPKESLTFGM

Ga0186650_115285

Ga0186650_1152851

F005228

MDQPKQIVAAKYQQTTSRATPDAVARELRKLPAASGPLDSRKRALHDLAHALAYVQEQHKTKVVEACTKDDAAGLLLSLLDDIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAAMLRLPPSGQRISAMELLMDTLLNTADSESVLFYAVAGLYNLSNDGSFADLAARKPGLLQKLEQ

Ga0186650_115757

Ga0186650_1157571

F071920

GMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMHQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA

Ga0186650_116028

Ga0186650_1160281

F094737

VRYQMVLSDSQAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW

Ga0186650_116076

Ga0186650_1160761

F080844

MAAPETPGYVVGAVTTRLTVTVPXXXXGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET

Ga0186650_119327

Ga0186650_1193271

F043734

CTSRRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017037: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 199 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP1083)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences