x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300017036
3300017036: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 108 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0888)
Overview
Basic Information
IMG/M Taxon OID 3300017036 Open in IMG/M GOLD Reference Gs0128947 | Gp0212007 | Ga0186295 Sample Name Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 108 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0888) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 26250866 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata 3 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Pacific Ocean Coordinates Lat. (o ) 30.8333 Long. (o ) -136.8333 Alt. (m) N/A Depth (m) 5 Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F033072 Metagenome / Metatranscriptome 178 N F063757 Metagenome / Metatranscriptome 129 Y F064745 Metagenome / Metatranscriptome 128 N F093977 Metagenome / Metatranscriptome 106 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186295_100373 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata 4306 Open in IMG/M Ga0186295_105013 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata 1515 Open in IMG/M Ga0186295_112967 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata 760 Open in IMG/M Ga0186295_115422 Not Available 590 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186295_100373 Ga0186295_1003734 F093977 WNQNISCRRREYVRAQTASIRQVTVIGLEPEVQRLIQKQKRDIIAQRTAQDLAWSAIRTKLSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIEKLQAELQKKLHLDSAKFQRMHQNLCVTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKQTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEMALAKPSYEAGSHAYKLLCTQTSRQQTHAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRIVDKIGLETVRHNHLTKMLASYTRS Ga0186295_105013 Ga0186295_1050131 F063757 MAPMYLPVWKSQSYGAFVLNLRVDLHAIDATPARWRGDAGSSPLDGTSAAASSPSPTHWLIFTQTGTLSGRVFHRAS Ga0186295_112967 Ga0186295_1129671 F064745 MESTFRMGSSTIYLSQSETYRNAVAAQYAGTLDLPAFCTALTDGTICEESGLGCDFISFHTGATNEECRRKALAKGESHSEAQTHIQSHDSNAGFAWEIDVVEVCMGAPCYKLEGNMGDDSDGCQMACLCPIGAGELEPTFYDDALALDFTDQCFQATTVSTSWTPSLKQVNTLVSTLVKAGKDSAQQAANCDCTVSTAC Ga0186295_115422 Ga0186295_1154221 F033072 DEVLQKLQHKVNKMKLILALAVGATAFGGFGKSAAPAPARGGGNQVAQGGQTVTNIQVPKIFTTAFGDPGRLQERAARAEAKKAEAEAQLIPTPARFAFAFGRPDILAERRAERLEKWQWSDEFLAKARPDKGNYGQGDVYDDGLTKLERTQIEQGREAYLTGGAKLRYKRLTGQI
