Sample 3300017029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300017029

3300017029: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 438 ?mol photons light - Hemiselmis virescens PCC157 (MMETSP1356)

Overview

Basic Information
IMG/M Taxon OID	3300017029 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211888 \| Ga0186176
Sample Name	Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 438 ?mol photons light - Hemiselmis virescens PCC157 (MMETSP1356)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	23274782
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	9
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	6
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005668	Metagenome / Metatranscriptome	393	Y
F010032	Metagenome / Metatranscriptome	309	N
F011850	Metagenome / Metatranscriptome	286	Y
F019282	Metagenome / Metatranscriptome	230	Y
F019841	Metagenome / Metatranscriptome	227	Y
F020015	Metagenome / Metatranscriptome	226	N
F021541	Metagenome / Metatranscriptome	218	N
F025760	Metagenome / Metatranscriptome	200	Y
F026478	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y

Showing 1 to 10 of 13 entries

Previous1 2Next

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186176_106801	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1031	Open in IMG/M
Ga0186176_106838	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1029	Open in IMG/M
Ga0186176_106996	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1015	Open in IMG/M
Ga0186176_107008	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1014	Open in IMG/M
Ga0186176_107730	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	954	Open in IMG/M
Ga0186176_107828	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	947	Open in IMG/M
Ga0186176_108827	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	871	Open in IMG/M
Ga0186176_109336	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	835	Open in IMG/M
Ga0186176_109674	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	810	Open in IMG/M
Ga0186176_110955	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	733	Open in IMG/M

Showing 1 to 10 of 17 entries

Previous1 2Next

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186176_106801	Ga0186176_1068011	F032673	ATLGKMVCIADYGSVGGAAPKMPRNNMRLLAGVMALAAVALVAVGTLSTPQDDGMATLAAFNKQEMNNMLVKAKTMSTSQLQKEVNELEAERQDGETRTSQLVTVNQNTAANPEGGVLENVPPTIVAPVPGPPDFNGASAVIARLPNVGFAPSMLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKHIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYS
Ga0186176_106838	Ga0186176_1068382	F019841	MFTLLAAVAFEQAGTADTGYAGSAGPVPQKWVNGNGTSYIYFGSGQFDGQGSGHDFYGTLFMPPTGSVNNCDGGRAHTYCDYRQQ
Ga0186176_106996	Ga0186176_1069961	F020015	AYAGAHSFGRMKEGAPAYAAVVERSSDGSAKRRQWMMQAAVVAAIGLAAVVCVGLVVHERGGASEGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVEHVARKHHYKLQIHHLTSFKDNAFRAALFSENIHAIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMARLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186176_107008	Ga0186176_1070081	F011850	RETCNFSLDRAEMFSRVALGALALVAGAEAFAPGGLPTTGARLSLRQTSSRKAMAVGPNMLDVSSITEGAQYITASVANVPFVDEITGEPQGFTAPLNQFASVIGLWVLFSLPVWSAAYKKAGGRTFDWVGVSQVTQEAPGIGAFPRYTPAYDGPSFTEGLTYFFSFFWKPPILIAWKPRTDLDLATMDPSRETVVSSLYKGFGGALDKDAYYDEQDQLLILSDIVTFAETDLGRRREKIAEENGWYQGNPSFGKSLIEYSEETKKGVKDFGTVTISAAELAALRAEAARQK
Ga0186176_107730	Ga0186176_1077301	F010032	IFTKGHSTMERPSLRLLNTVSASLALCLLALAGWHMQNRSTHFELFSSSAAAVAPQQTTELSFLQTSKFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDSSVHCLVWPPLVAYPGLSETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATIAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAVDM
Ga0186176_107828	Ga0186176_1078281	F087277	RLRLSTMAQPCEFKRRARMAMAAVSATAMALVVVICLLESGKQQAPISGGEQWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNLQVHLDAVHTALGQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKASSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE
Ga0186176_108827	Ga0186176_1088271	F010032	HGKMVSGRALNTVSCAAALMCLTLGVVHFRSSRPTALFQKAAVPVQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATFRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRIEQASIETYAIKTRSLPPGGKSMLDTLGATVAFAVRYDLGTVCYIGYNYNTPFHADQWTRVLHSAVDM
Ga0186176_109336	Ga0186176_1093361	F021541	MADVSLLSPHHQMFSTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186176_109674	Ga0186176_1096741	F019282	MFSLLTLTMLGCKDDVNTINTWAEPHNANGITPNTVIDSNDEPPKNNQQRMAARCY
Ga0186176_110955	Ga0186176_1109552	F021541	MPGATLQSLTPSPLSTPRFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186176_111596	Ga0186176_1115961	F020015	AGAGSDVAMGGAYYAVSKPPAFNFNRFIENTWIYDGRNADAGTEGFVEHMAKRHHYKLNIHRLNSLRDNEFRAALFSRNIHCIMFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIINDAFGFQLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDGSIYAAKVDSLPLTGKCMFDTMGACVVFYVKYNLGTVAYIGFAYDTPYGIEHWDQILHAAMMM
Ga0186176_112076	Ga0186176_1120761	F026478	KMAPRLLCVAVACLLAVATLTDAAKPKRKTVSISDEETVKARDFALSEIIKLSDSYRDLKFTKVISAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGAAKTEL
Ga0186176_112752	Ga0186176_1127521	F019841	MFQFLRSVDFDTGYAGSGGVGPQSWENGNGTSYIYFGSGQFDGQGSGHDFYGTLFMPPTGSVNNCDGGRAHTYCDYRQE
Ga0186176_112910	Ga0186176_1129102	F005668	MFQLMFDLGEYATTYRATRDAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE
Ga0186176_112927	Ga0186176_1129272	F101267	NRTAMGCCSSRPPGAHEWQSQVPGSYKQNPVPIVNKKKDLPPDFFIKCYMKGWLRTMPKKQRIWCMIHDNNFYFMDSEEDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFIAEDEEKALEWYEASLKASSRRN
Ga0186176_113188	Ga0186176_1131881	F019841	VEVVARALAVEMFQCLAVARSVDFDTGYAGSGGVGPQSWVNGNGNSYIYFGSGQFDGQGSGHDFYGTLFMPPTGSVNNCDGGRAHTYCDYRQQ
Ga0186176_113481	Ga0186176_1134812	F096687	VCPFEQGRRMRELLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186176_114249	Ga0186176_1142491	F025760	MMMPAMRSLYASPNGGRNDPYSMYDTRMGGNWYKADEPWGAYLQGEGNPAVTIHPYESDPSSGSFNPQAHTSWVPVDWSSWPNYNVHGYGIY

Showing 1 to 18 of 18 entries

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.