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Sample 3300017028
3300017028: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 143 ?mol photons light - Emiliania huxleyi 374 (MMETSP1008)
Overview
Basic Information
IMG/M Taxon OID 3300017028 Open in IMG/M GOLD Reference Gs0128947 | Gp0212258 | Ga0186546 Sample Name Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 143 ?mol photons light - Emiliania huxleyi 374 (MMETSP1008) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 20901272 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 1 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi 1 Not Available 1 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 42.5 Long. (o ) -69.0 Alt. (m) N/A Depth (m) 5 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F009840 Metagenome / Metatranscriptome 312 Y F015173 Metatranscriptome 256 Y F034449 Metagenome / Metatranscriptome 174 N F096482 Metagenome / Metatranscriptome 104 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186546_107848 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 937 Open in IMG/M Ga0186546_110781 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi 703 Open in IMG/M Ga0186546_111297 Not Available 668 Open in IMG/M Ga0186546_112501 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus 595 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186546_107848 Ga0186546_1078481 F015173 ASTTGLCTRTPRSIVVSMLNDTAAFNSTGVAEDQVTLVGLFNQLLALLFPIWPWEPFIVMPFALEILRAKRKTGLSVGFVTIFAAVFCLAHGVGFVQAIDTVFYGGSGICACALPGAPDDIDTKAMCNMMAIHIFLMLLMGVFFARIALSPSRRVPVGGLEAVYCSRAALFFVVGGVSQGIPYWAVTFQYPERFEEFMRADGFYSARGITPGAVEFVSPLVWIVYGLYSYGELMSLVDSAGNTANDKASVGGALPPMV Ga0186546_110781 Ga0186546_1107811 F034449 DAENTYMPTLKLAALALLASSTAALKVEKPVVKPVLKLRGGVSAGDVITGGALFLSASVGLPALAGGSDALFMINYPGFDWAGYQAKWTAESKSYLDTMTRFFGGALLLAGALQYYAKDVMAAKPYYAILTVTQLVFAGLQIFFAAPTAAMPSVHYVYAGMNAVLAVAGAMAMI Ga0186546_111297 Ga0186546_1112971 F009840 SMRALSWLLLCSFRGTSALQPSRPGVSRRPLLQHALALGVLAPGAAAAAAEKKPSLKEVVAQLDAGTPKEERNAHGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP Ga0186546_112501 Ga0186546_1125011 F096482 AEGPLLGIARSDSHKGTTRLTMLLLVFVSAQSFQPLLRPPSPLPAARLSPPSCMARWTTQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFM
