3300017027: Metatranscriptome of marine eukaryotic communities from unknown location in H/2 medium, no silicate, at 23 C, 0 psu salinity and 696 ?mol photons light - Hanusia phi CCMP 325 (MMETSP1048)

Overview

Basic Information

• IMG/M Taxon OID: 3300017027
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211834 | Ga0186122
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in H/2 medium, no silicate, at 23 C, 0 psu salinity and 696 ?mol photons light - Hanusia phi CCMP 325 (MMETSP1048)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29989720
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	8
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F014152	Metatranscriptome	265	N
F020015	Metagenome / Metatranscriptome	226	N
F023110	Metagenome / Metatranscriptome	211	Y
F026478	Metagenome / Metatranscriptome	197	Y
F026581	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F036560	Metagenome / Metatranscriptome	169	N
F048352	Metatranscriptome	148	N
F067806	Metagenome / Metatranscriptome	125	N
F082776	Metatranscriptome	113	N
F084315	Metagenome / Metatranscriptome	112	N
F087277	Metagenome / Metatranscriptome	110	N
F096687	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186122_101302	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	3114
Ga0186122_103220	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2155
Ga0186122_107201	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1354
Ga0186122_107308	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1340
Ga0186122_109776	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1058
Ga0186122_109970	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1039
Ga0186122_110956	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	938
Ga0186122_111742	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	864
Ga0186122_111743	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	864
Ga0186122_113119	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	755
Ga0186122_113172	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	751
Ga0186122_115176	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	610
Ga0186122_115197	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	609
Ga0186122_115663	All Organisms → cellular organisms → Eukaryota	579

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186122_101302	Ga0186122_1013022	F067806	FGRMAGMKVGDMELGYGSFQVEGRSNWKRKAFLVAMGMAMAALMVLLGIDQAHEISEPTRQSLSTQRLFAADNEGMNGGTSGVAASKGDASDFMNSADLGDYVDAIIGPAPTGLTEGGYKKRGSIAVSKIDAAGFYYLNVEGEPGHALECILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186122_103220	Ga0186122_1032203	F096687	SEDCPLLLQEAAMLEILYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186122_107201	Ga0186122_1072011	F036560	SGSMLSRPAMVFTTLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186122_107308	Ga0186122_1073082	F084315	SRAMAWRSYGTVAEEEGGRRAGGRKTASLVAALAFTAVAAVLCIIALTQSQDKKSELVDEKLVLFKMEPPPEPWSPPANLWMFWGQSPNKRFGHSGDNIRHLVKLGRLAGGEYRDPHFLFNFDSQTFRDLSESCCTTMLVAPMKNDMPIYNAESNVAQRLRNYVANGNHIVFTGGSLVSIEFINRYFFYNIEPESSSGTFKGSGYGNWSPGPFRKLITKDLPWVYKLTPDTLYQDHTSVQSMALRSLPSGTSVIYMTPKSSPVFLIKFCQRLSERHGEPPIKTVPKDCWRHAASGYPCSCGTISYIGYDWHYDQDAADWDKVMLAAVEYQSDPDESTTFSPNCKQPPRVIEDPHAPKNPPMCGMK
Ga0186122_109776	Ga0186122_1097761	F010032	MMVTERSLNTASCSLALVMMCMAVWHMQNPAHFGRKSALAQPAQQTTQLSFLQTSAFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVVFLGNYVAVQFMNDVYGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRVEQASIETYAVKSRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186122_109970	Ga0186122_1099702	F020015	IEGMAESYGAAAPMASMVLADKQKRRTLAKVALFLTATIVAVACGVLLAMEHRGNSDNQGALSGAYYAVTKPPAFNFNRFIRNAWFYTGRSSDGQEEGFIEKLARKHHYKLQIHHLESFKDNEFRAALFSENIHCIVFPPLIHFPGVSELAKKDLRGYVSAGNNVVFIGSYEWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSLSRLEQPDGSIYSVKVNSIPMDGKCMFDTMGACVVFYVKYNLGTVCYIAFDYDTPYGIGHWDQILHAAMMM
Ga0186122_110956	Ga0186122_1109561	F087277	NRAGMLSPFERRARVSFLAVAAAAAAFALAIVVLESSSPAPYYGKPVTAPERWLEDGRASINMFRVARSDMQKKVLRGTELPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFNPQYDLQVRLDSIHTALSQLAAQTGVYLTNPPVVQVDESVFDEAATDVSRFRKLVERIPEMHNAKYYWVVQYNIIRTELRKVSSMLTTVVNIAKHHFLEVADSIDSMRMNIEAMHEG
Ga0186122_111742	Ga0186122_1117421	F032673	VMNDYGSVPSVSSSMPRRKTAMMYAGIAVLACMAVIGMAFVSYDQDEGFWDDGSVTLAQLNKQEMNEILAKAKSMSTDQLRAEVAQLEADKRTRTTSLAKVRKQSLVVRGGQEDVAGNPEGGIIENVPPTVVAPVPGPPDFNGASAIIARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQVQTGHIPRGIVGEFDIMTCRDLTNGEVQYFRIRYD
Ga0186122_111743	Ga0186122_1117432	F082776	EESGAMAIVSYGSLPHAAESPKKRSSSLLIGIAAASALVLVGVIALVARQDFEDPDGSVTLMNLNAQEAREMKARRQSLVVRGGQEDVAGNPEGGILENVPPTIVAPVPGPPDFNGASAIVARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLSGDFTGNTIYTGFKKIYTGKSQVQTGHVPRGIVGEFDIMTCRDLNNGEVQYFRIRYD
Ga0186122_113119	Ga0186122_1131191	F023110	MLDDAPWTWESSWNKDMPSFFQGMPNGVYDNIYDDLDDSPVSYHTTQPVDPTEYQNEWLGDVINIY
Ga0186122_113119	Ga0186122_1131192	F023110	MMFKVLPSRSLELAPWTWQSSWNRDMPSFFQGMPNGVYDNIYDDLDDSPVSYHTTQPVDPTEYQNEWLGDVINIY
Ga0186122_113172	Ga0186122_1131721	F026581	RRLVKEMVAVYNTFGDVEAVRPASSTNWKKYAAVIAGAWAVMFVAAVMVIGAYDKKTTLYQRPRMQMLAFKEFVPETNVFENFDASFTPEKKFEYDLAKEADYSQINIASGVDGDTVEEGIPDPYADQSARIEVPAAVYTQDPPYDPTVVEIGEKVLGKPFHEYTAAEEGDPVMGKDYEDVPFDKTINSVPEPNPSREWESLDVENEPNPNY
Ga0186122_115176	Ga0186122_1151761	F048352	SMYTDLVSPVPRERRESSNRQVIAGLAIVALGLCAVLFAVGEQSTEDDSVRNLLQATKSRMPALSKMSARQQALYDSGMEDEASKQMNIAYQTFMKAKDANVAGEYDALNSTLTEEQNALVDYADEMKAIELEVANEAKEHKNQYSPKLPSE
Ga0186122_115197	Ga0186122_1151971	F026478	PRVGEEMARRNGVPLLVCRLSLLVLLVSPAMAAKPKRKKVSIDEEEVIKARDFALAEIVKLSDSYRDMKINKVISAETARSAFADGTNYFLKMELECTSKCEAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDEDDKAKDEL
Ga0186122_115663	Ga0186122_1156631	F014152	MVKVYGTSASTANEREHNSVSRQIAFTLAISALALTVCCALIASADLKGNRVALYGLGSGEEQDADNSMVTTFETFAGQDEYMEELLGDEYYEELFKEIADSEPISEAVDEVKVAVDEAKNEHKTLQMFAEGADAPLS