3300017019: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 6 C, 21 psu salinity and 416 ?mol photons light - Detonula confervacea CCMP 353 (MMETSP1058)

Overview

Basic Information

• IMG/M Taxon OID: 3300017019
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212238 | Ga0186526
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 6 C, 21 psu salinity and 416 ?mol photons light - Detonula confervacea CCMP 353 (MMETSP1058)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35531693
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	2
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.6
  • Long. (^o): -71.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067805	Metagenome / Metatranscriptome	125	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186526_116156	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	734
Ga0186526_117491	All Organisms → cellular organisms → Eukaryota → Sar	601
Ga0186526_118156	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186526_116156	Ga0186526_1161561	F099352	MVFNGSEAFRGAGAPSLKGEVSVSQNTNRVVLDSQELNAASGAFNLCCAEAYSRFTELKRVKIHPGNMTTERDAVESCSANVFNGIQSSCLEQFEAVKSCISDNSDEWAKCAAVRRELEVCSVTNKFGELKKA
Ga0186526_117491	Ga0186526_1174911	F067805	MGQPKEELTLSKKEQKKVDKLSAQIPYHEGRGNKEEVTKIKERVDAIWIKAKEAHEAQFA
Ga0186526_118156	Ga0186526_1181561	F067805	MGKKQQPKEEDLTLSKKEQKKVDKLSAQIPYHEGRGNKEEVTKIKEQVDAIWTKAKAAHAAQFA