3300017013: Metatranscriptome of marine eukaryotic communities from North Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 25 C, 15 psu salinity and 602 ?mol photons light - Skeletonema marinoi SM1012Den-03 (MMETSP0320)

Overview

Basic Information

• IMG/M Taxon OID: 3300017013
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212057 | Ga0186345
• Sample Name: Metatranscriptome of marine eukaryotic communities from North Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 25 C, 15 psu salinity and 602 ?mol photons light - Skeletonema marinoi SM1012Den-03 (MMETSP0320)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35259477
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	11
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Sea
• Coordinates
  • Lat. (^o): 55.5837
  • Long. (^o): 12.412
  • Alt. (m): N/A
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F068121	Metagenome / Metatranscriptome	125	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186345_110596	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1225
Ga0186345_111457	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1136
Ga0186345_111791	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1100
Ga0186345_112066	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1072
Ga0186345_112293	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1048
Ga0186345_112642	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1017
Ga0186345_112730	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1009
Ga0186345_113062	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	978
Ga0186345_113558	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	929
Ga0186345_113650	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	921
Ga0186345_113942	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	890
Ga0186345_114575	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	822
Ga0186345_114663	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	814
Ga0186345_117053	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	602

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186345_110596	Ga0186345_1105961	F034938	MNAPFPNAQRMHYEGAASSSTGGGGHRTMINEAIILPKISADDQVAQRDDEESNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQTGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186345_111457	Ga0186345_1114571	F034938	RLAPIYSWAYCVEISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDINGDHCSLAYFGMDVCVDLTSKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVYDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASASASAYGKDISFTRVGSIQEVNAQPHQQHVHRGVGIFSVSIEVEGTPNFKPTPGAGDEAKLTFTLVSVRTWGITDYVAPIVYASSK
Ga0186345_111791	Ga0186345_1117911	F034938	RTQHKKRPLSIDPPPPINNIMMMHYTTNNTTEGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_112066	Ga0186345_1120661	F034938	CIVLMFCITAQLSKRMSRNCFDVEVEVEVEVEENSFENSGRMMEANINVPNIANHIDIDQAAQAQREDASSTNSNMVKWRGNAVSKKEAKGLRHVFDNLQDHFGHERPDPRIRFSASLAHPGQGQIWNGDLDFTYDINGDQCDLAYVSMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_112293	Ga0186345_1122931	F034938	MHKMAANEANVNQNIAAQNEQAGQIDVDEDPNMVQWRGNLVTEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHVSLAHPGHGQKWHGDVDFTYEIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPQLSIDKVKSYVKAGTGWDVSGEGFIDDNNRSMVAIEVKLCNESGQPEPSFWVVKDKDASGGRGSMSFSRIGSVQEVAAQPHQQRIHRGIGIFSISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLD
Ga0186345_112642	Ga0186345_1126422	F034938	MANEAPANVIPIPNDEESVASNADKDMVKWRGNLVPREEAKALRHVFDDLKDHFGHQQPDPHVRANVTSFKHPGHGLMWHGNLDFTYQIEGEHCNLGYIGMDVCIDLIPKKCQKQGEPTLKDYGKTWVYVYTPQETLDKFIKYVKIGTGWGVSTDGTAHDPNRNLVAIEARLHHQTDQPKPSFWVAKNRDASIGDMSFSRIGSVQEVNETSAQQRVHRGIGIFSVSLEVEGTPNFEPTPGNRDDANLCFTLVSVRTWGITDCVAPIVHAPSKWF
Ga0186345_112730	Ga0186345_1127301	F034938	ISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRVRFSVSLAPGQGQIWYGDMNFTYNINGDHCDLDYIAMDVCVDLTPKVVHKHGQPMLKDYGNSWVYVYLPGLTLDNVKSYVKTGTGWDVSTEGIVYDPNRNLVAIEAKMSNQTGQPKPSFWVAKDKDTSASRGDMSFSRIGSVQEVNAQPQHQFVHRGVGIFSVSMEVEGTPSFKPTPGAGDEAKAKLSFTLVSVRTWGITDCVAPIVHTPSMGLN
Ga0186345_113062	Ga0186345_1130621	F034938	RLAPIYSWAYCVEISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDINGDHCSLAYFGMDVCVDLTSKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVYDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASGGDICFSRMGSVQEVNALPHQQHVHRGVGIFSVTMEVEGTPNFQPTPREGEEANLSFTLVSVRTWGITDCVAPIVHSPPDKWS
Ga0186345_113558	Ga0186345_1135581	F034938	ISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRVRFSVSLAPGQGQIWYGDMNFTYNINGDHCDLDYIAMDVCVDLTPKVVHKHGQPMLKDYGNSWVYVYLPGLTLDKFNSYVKIGTGWDVSDERTVYDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_113650	Ga0186345_1136501	F034938	NQNIAAQNEQAGRIDDEDSNMVQWRGNLVPEKEAKALRHVFDNLQDHFGHQRSDPRVMFNHVSLAHPGHGQKWHGGMDFTYDIGGDHCNLKYIGMDVCIDLTPKLVHKHGQPMLKDYGRSWVYVYLPQMTIDKVKSYVKAGTGWEVSDEGFIGDPNRNLVAVEANLNHQGGEPEPSFWDIQDQDDSGGRGSISSSRIGSVQEVTAYSHHQRIHRGVGIFSVSMEVEGTPNCKPTPGVGDEAKLCFTLVSVRTWGITERVAPIVYAPSKWH
Ga0186345_113942	Ga0186345_1139421	F034938	RDDEETVAAAATTMTQWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_114575	Ga0186345_1145751	F068121	LPKGKIKPSPEDKTIWTDDDGRPWKLNAEPNAAYHQPYTVPIAFIRAHLSKFIPGLKVPNLKFISPNADGKYSEIVANRYTGELIIEQNIMGTFNLATDAPDAMIDGKLPTIGGHNLLDVIPHNKYGGGYKHIATGIETGSIEKGPIVLAHLEEIASF
Ga0186345_114663	Ga0186345_1146631	F068121	MSDEQIKQETGLSREDHENRNQFNELPKGKIKPSPEDKTIWTDDDGRPWKLNAEPNAAYHQPYTVPIAFIRAHLSKFIPGLKVPNLKFISPNADGKYSEIVANRYTGELIIEQNIMGTFNLATDAPDAMIDGKLPTIGGHNLLDVIPHNKYGGGYKHIATGIETGSIEKGPIVLAHLEEIASF
Ga0186345_117053	Ga0186345_1170531	F099352	MVFNGAEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKIHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS