3300017006: Metatranscriptome of coastal eukaryotic communities from Narragansett, Rhode Island in f/2 medium with seawater, 14 C, 36 psu salinity and 161 ?mol photons light - Skeletonema grethae CCMP 1804 (MMETSP0578)

Overview

Basic Information

• IMG/M Taxon OID: 3300017006
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212393 | Ga0186681
• Sample Name: Metatranscriptome of coastal eukaryotic communities from Narragansett, Rhode Island in f/2 medium with seawater, 14 C, 36 psu salinity and 161 ?mol photons light - Skeletonema grethae CCMP 1804 (MMETSP0578)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20930139
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Narragansett, Rhode Island
• Coordinates
  • Lat. (^o): 41.4331
  • Long. (^o): -71.455
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F068121	Metagenome / Metatranscriptome	125	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186681_106809	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1156
Ga0186681_107126	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1116
Ga0186681_107525	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1064
Ga0186681_109801	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	794
Ga0186681_110012	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	769
Ga0186681_110127	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	753

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186681_106809	Ga0186681_1068091	F034938	MKPISPKTQTLPHMITREKSMQRENGNNGFAHPHPVDMVRWRGNLVPEKEAKALRHVFDNLQDHFGHQRPDPRVRFFNKDLTHPGGRGQMWTGELEFTYDVNGDPCDLAYMSMDVCIDLAPKLVHKHGQPMLKGYGSSWVYVYLPEPTYNKIKSYVKVGTGWDVSDEGTVHDSNRNLIAIEAIMHHEVDQPKPSFWVVKDKDSSGSDICFSRIGSVQEVNADPQHQFVHRGVGIFSVSLEVEGTPNFKPTPGTGDEANLIFTLVSVRTWGVTECVAPIVHASDKWS
Ga0186681_107126	Ga0186681_1071261	F034938	MHYTNNNTDDAERLSHYSAYPKIAHQPQPHAHHAIRHNAADHNNQITAASRDDEETVATAANTLADWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNSINLARLGNSGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLKDYGQSWVYVYLRQLTLDKVKSYVKSGTGWDVSDEGTVFDPNRNLVAIEAKMHNKGGQPKPSVWVANDKNASAQDMSFSRIGTVQDVSTHPSQQRIHRGVGIFAVSMEVEGNHNVMPVPGRGYEANLSFTLVSLRTWGSTDCVAPIVHAPSKWY
Ga0186681_107525	Ga0186681_1075251	F034938	MMADDEAAANVIPKDDDESAPSNANTDGMVKWRGNFVPKEEAKALRHVFDELKDHFGHQKADPMVRVNVASLEHPGSGPVWRGNLDFTYQIDGEHCNLGFIGMDVCVDLIPKRITKDGELLLKDYGKTWIYVYLPQETLNKFKQYVKTGTGWSVSTEGTVEDHNRDLAAIEAKLHHLNGQPKPSFWVAKDRDASIEDMSFARVGSVQEVNESSEQQRVHRGIGIFSVTMEVEGTPNFKPTPGSTRDEVNLCFTLVSVRTWGITDCVAPIVHAPSKWF
Ga0186681_109801	Ga0186681_1098011	F068121	MSDEEIEREIGLSREDHENRNQFNELPTGLLKPSPEDYTIWKDDNGRPWKLNAEPNAAYHQPYPVPIAFIRAHLSKFIPAMKVPNLKFISPNADGRYSEICANRYTGELLIEQKIMGTFNMCTDAPDAMVDGKLPTTGEHDLLDIIPHKKYGGEYKHIAAGIKHGSIEKGPVVLGHLEEQ
Ga0186681_110012	Ga0186681_1100121	F034938	NKFGEYEVPSATAQRDDEETIPSIGNTMTRWRGNTVSEKEAKALRYVFDDLQDHFGYQCVDPRVRFNNTNLEYLGNSGKWFGDLDFTYNIKGDHCNLSYIGMDVFVDLAPKLVHKVGQPMWKEYGSSWLYVYLPQLTFNKFKSYVKFGTGWDVSDERTVYDPNRDMVAIEAKLQSGQPKTSFWAAKEKQAFTGAGDRSFSRVGTIQDVSSHSSQQRIHRGVGIFSVSMEVEGTPNFKPSPHMDEADLCFTLVSLR
Ga0186681_110127	Ga0186681_1101271	F099352	AGDRILLGTIIDLVAAADQIIIMVFNGAEAFKGGASAPSLEREVSVTSNTNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIQASCVEQYNAVKSCLSDNPDEWAKCASMRRELEVCSVKNNLGELKK