3300016987: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no nitrate, 14 C, 36 psu salinity and 149 ?mol photons light - Skeletonema dohrnii SkelB (MMETSP0563)

Overview

Basic Information

• IMG/M Taxon OID: 3300016987
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212248 | Ga0186536
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no nitrate, 14 C, 36 psu salinity and 149 ?mol photons light - Skeletonema dohrnii SkelB (MMETSP0563)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29092540
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	5
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → well-mixed estuary → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.57361
  • Long. (^o): -71.40861
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186536_109432	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1151
Ga0186536_109521	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1142
Ga0186536_109600	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1133
Ga0186536_110914	All Organisms → Viruses → Predicted Viral	1007
Ga0186536_111530	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	956
Ga0186536_111778	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	934

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186536_109432	Ga0186536_1094321	F034938	GTFHIPLPFHNPKVYNRNSNMMNAPFPNAQRMHYESAASSSTGGGHRTMINEAIILPKISADDQLAQRDDEEESTNASATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYLGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQTGQPKPSFWAVKDKDAHGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186536_109521	Ga0186536_1095211	F034938	LLPMIISEHPCHQQVSYVCIIRTVTTSVLPLPPKPKMKMAANVNQNIAAQNEQARRIGDEDSNMVQWRGNLVPEKEAKALRHVFDNLQDHFGHQRSDPRVKFNHVSLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCVDLTPKLVHKHGQPMLKDYGRSWVYVYLPQLTIDKVKSYAKAGTGWEVSDEGFIGDPNHKLVAIEANLNHQCGEEPSFWDIQDQDASGGRGSISSSRIGSVQEVTAYSHQQRIHRGVGIFSVSMEVEGTPNYKPTPGVLGLGDEAKLCFTLVSVRAWGITERVAPIVYAPSKWH
Ga0186536_109600	Ga0186536_1096001	F034938	LLPMIISEHPCHQQVSYVCIIRTVTTSVLPLPPKPKMKMAANVNQNIAAQNEQARRIGDEDSNMVQWRGNLVPEKEAKALRHVFDNLQDHFGHQRSDPRVKFNHVSLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCVDLTPKLVHKHGQPMLKDYGRSWVYVYLPQLTIDKVKSYAKAGTGWEVSDEGFIGDPNHKLVAIEANLNHQCGEEPSFWDIQDQDASGGRGSISSSRIGSVQEVTAYSHQQRIHRGVGIFSVSMEVEGTPNCKPTPGTWDEAKLCFTLVSVRAWGITERVAPIVYAPSKWH
Ga0186536_110914	Ga0186536_1109141	F034938	SRTHNSLTLPAPVLVSQTSSQHHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHEEEETMVQWRGNLVAENEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGDVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGTSWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKAKLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVANLVFTLVSVRTWGITDCIAPIVHAPMM
Ga0186536_111530	Ga0186536_1115302	F034938	MINEAIILPKISADDQLAQRDDEEESTNASATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYLGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQTGQPKPSFWAVKDKDAHGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVA
Ga0186536_111778	Ga0186536_1117781	F034938	IRVLRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDINGDHCSLAYFGMDVCVDLTQKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVFDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASGGDICFSRMGSVQEVNALPHQQHVHRGVGIFSVTMEVEGTPNFRPTPREGEEANLSFTLVSVRTWGITDCVAPIVHSPPEKWS