3300016986: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 413 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0887)

Overview

Basic Information

• IMG/M Taxon OID: 3300016986
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212006 | Ga0186294
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 413 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0887)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22740730
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 30.8333
  • Long. (^o): -136.8333
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064079	Metagenome / Metatranscriptome	129	Y
F081388	Metagenome / Metatranscriptome	114	N
F082805	Metagenome / Metatranscriptome	113	Y
F093977	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186294_101844	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2256
Ga0186294_102539	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1939
Ga0186294_102688	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1886
Ga0186294_108728	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	929
Ga0186294_112277	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	636

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186294_101844	Ga0186294_1018442	F082805	MGHVLEAENSFAVRRRTRPQGGRAGLILSIPADEVSLGSPRVGTIHVQAPTPQAPPLQAFLVDFSQQPMSTFSKRAGPLSVDLHA
Ga0186294_102539	Ga0186294_1025391	F093977	MYENCPRDKCESLHLKLLLSRVTAPSQINEDSICRALAAVLHKNDVRLEACRIKWNQNISCRRREYVRAQTASIRQVTVIGLEPEVQRLIQKQKRDIIAQRTAQDLAWSAIRTKLSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIEKLQAELQKKLHLDSAKFQRMHQNLCVTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKQTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEMALAKPSYEAGSHAYKLLCTQTSRQQTHAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRIVDKIGLETVRHNHLTKMLASYTRS
Ga0186294_102688	Ga0186294_1026881	F093977	VTVIGLEPEVQRLIQKQKRDIIAQRTAQDLAWSAIRTKLSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIEKLQAELQKKLHLDSAKFQRMHQNLCVTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKQTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEMALAKPSYEAGSHAYKLLCTQTSRQQTHAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRIVDKIGLETVRHNHLTKMLASYTRS
Ga0186294_108728	Ga0186294_1087281	F081388	PAHSPIDTMARPLLGALLLARLATAQDIDIKRIENPGVVLYKTSGPLPEARLGDDFPGSFPARFLRQAWGLEGPHSPEGAALVNATGVCTSSEITDEFFGQAMLERAKAMFDDRGLRHELDAFLQSGVSNTHSPTPRRMYWVGIDILPNQSLALHSHPNVEFVYVAAGVMHEWRCPKCPVKRKYIPEEIKTNGKTIEKYWGPDLHKVNAKARGMFRHDAYNAGDMFINAIGDVHQSYTEEEGVKLLVMWGDGNADVPLEQLPRHSDFLNVGAAKAWD
Ga0186294_112277	Ga0186294_1122771	F064079	TIDGTGADGPRSEGGRRILLDNSRVYVRFLPFVSGRLHLGRLGGDELC