3300016976: Metatranscriptome of marine sediment eukaryotic communities from Atlantic Ocean in seawater with wheat grains, 20 C, 35 psu salinity and 137 ?mol photons light - Vannella sp. CB-2014 DIVA3 518/3/11/1/6 (MMETSP0166)

Overview

Basic Information

• IMG/M Taxon OID: 3300016976
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211748 | Ga0186036
• Sample Name: Metatranscriptome of marine sediment eukaryotic communities from Atlantic Ocean in seawater with wheat grains, 20 C, 35 psu salinity and 137 ?mol photons light - Vannella sp. CB-2014 DIVA3 518/3/11/1/6 (MMETSP0166)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19114443
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): -35.98833
  • Long. (^o): -49.0175
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007073	Metagenome / Metatranscriptome	358	Y
F014836	Metagenome / Metatranscriptome	259	Y
F061786	Metagenome / Metatranscriptome	131	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186036_104929	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1277
Ga0186036_107513	Not Available	939
Ga0186036_110547	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	640

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186036_104929	Ga0186036_1049292	F014836	SCFYCLFTMVQKLVFLFVLAVLSVSSANHCSARAPCHQERIYNGCHCFVEWNDANSVGNWTVKENWLQLAEPAWPSFVSISGDNTITVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRVQGFRLATGEVRLVIQGKGFGFVSEDVSVVATEFYENDDDANIEDHELFEYQCEHVTLTYRDAKIECNIPAANLMPYTLQVQVSANGFTTDFVQLSEHIK
Ga0186036_107513	Ga0186036_1075131	F007073	FVVLVAFCAAALALDAVGEGFAGSPDQVINPANWHGTWTANNRYGGQMYACPKGDRLYGVYSNAGFFIGRIEGRVVEGTWYEGGRGDRNDWQGAFRIELDADNQGFDGFYHRVTQDGTELRWKEERLGAPWPSNPTQDQCLVPGDEPLLGNFYNEAGQGRESAVYSLCKDEFDQIYGSFGSPDGFLEGWSVDDSTGFHGYRYDSNGRSGAYILRAVSDTVVKGFYWRGRLARQNIETSVPETLHRTSYTSRLDDCERVGPGFLRRLRGPTAAAGTLNVSMVVVALVAFAALLF
Ga0186036_110547	Ga0186036_1105471	F061786	VIMGANNTKGLYLCETIYPPEDGRSCIPPEKLEKAIKKGEIPPPSQDDEEDLDGNMDEVIDGCIREVWAYYDPKGAGALNKKQTQQFFKDALNLVALRKQCKVKDLFQGRNQSSALDAAFKKVNTSGDGRVTFEQFEEFINMCELDEAISFLTGADGEVQIDTTRVEMVDTSAIPSGGGPVKGKIEYRDYSALE