3300016957: Metatranscriptome of marine eukaryotic communities from Woods Hole, Massachussetts in DYV freshwater medium, 18 C, 0 psu salinity and 156 ?mol photons light - Dinobryon sp. UTEXLB2267 (MMETSP0020_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300016957
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211767 | Ga0186055
• Sample Name: Metatranscriptome of marine eukaryotic communities from Woods Hole, Massachussetts in DYV freshwater medium, 18 C, 0 psu salinity and 156 ?mol photons light - Dinobryon sp. UTEXLB2267 (MMETSP0020_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27592808
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Sippewissett Pond, Woods Hole, Massachussetts
• Coordinates
  • Lat. (^o): 41.57595
  • Long. (^o): -70.64038
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037232	Metagenome / Metatranscriptome	168	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186055_111444	Not Available	751

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186055_111444	Ga0186055_1114441	F037232	SSSNNVMTAFQIFETVNTVYGPGYVSGIREDCYVVKLVNWALAQGQSPTLYLQTEALSKVPGAFPGTTVSTSFGPARIEKIRADGVHIAKPINWKLANDTVATLYLQPEMVKLAQTPGLEEGDEVMTVYGQGFVAKKRAQEGDYVVKLRHWALAQGQSPTCYLQASACVKIPGLKIGSIAKTVWGLVKLQEIRRDGTHVCVGIHWALADGKPPTFYLAPEAFALLSLKP