3300016924: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 105 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0886)

Overview

Basic Information

• IMG/M Taxon OID: 3300016924
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212009 | Ga0186297
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 105 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0886)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18192204
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	16
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 30.8333
  • Long. (^o): -136.8333
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017306	Metagenome / Metatranscriptome	241	Y
F017397	Metagenome / Metatranscriptome	241	N
F023863	Metagenome / Metatranscriptome	208	N
F033072	Metagenome / Metatranscriptome	178	N
F037241	Metagenome / Metatranscriptome	168	N
F039006	Metagenome / Metatranscriptome	164	N
F063757	Metagenome / Metatranscriptome	129	Y
F067780	Metagenome / Metatranscriptome	125	N
F070163	Metagenome / Metatranscriptome	123	Y
F075316	Metagenome / Metatranscriptome	119	N
F077349	Metagenome / Metatranscriptome	117	N
F081388	Metagenome / Metatranscriptome	114	N
F093977	Metagenome / Metatranscriptome	106	N
F096036	Metagenome / Metatranscriptome	105	N
F100442	Metagenome / Metatranscriptome	102	N
F101226	Metagenome / Metatranscriptome	102	Y
F105005	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186297_101757	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2069
Ga0186297_101869	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2010
Ga0186297_101873	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	2009
Ga0186297_102133	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1883
Ga0186297_103662	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1443
Ga0186297_105480	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1113
Ga0186297_105732	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1077
Ga0186297_106112	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1023
Ga0186297_106557	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	965
Ga0186297_107197	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	886
Ga0186297_107418	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	861
Ga0186297_107861	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	808
Ga0186297_108204	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	770
Ga0186297_109076	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	681
Ga0186297_109079	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	681
Ga0186297_109554	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	636
Ga0186297_110545	Not Available	548

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186297_101757	Ga0186297_1017571	F101226	MLGLDRVGGFLEAIAALEPKRVKSDKFQYPKSLSDPDWDGSISINTYTDYSTLYGPFTVHSYHEEWDSGTDIYATDAETGKDLMTYIVQCMRASGRYRGDELFGTPDDDGAREDSEGLREMDEVEADYAGCLVRVGNAASTASRRVLPRRLGTFYRGNVARDHGDDTYDIVYYRYADGERVRETRVAERLIRKPGV
Ga0186297_101869	Ga0186297_1018691	F093977	VIGLEPEVQRLIQKQKRDIIAQRTAQDLAWSAIRTKLSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIEKLQAELQKKLHLDSAKFQRMHQNLCVTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKQTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEMALAKPSYEAGSHAYKLLCTQTSRQQTHAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRIVDKIGLETVRHNHLTKMLASYTRS
Ga0186297_101873	Ga0186297_1018732	F101226	MLGLDRVGGFLEAIAALEPKRVKSDKFQYPKSLSDPDWDGSISINTYTDYSTLYGPFTVHSYHEEWDSGTDIYATDAETGKDLMTYIVQCMRASGRYRGDELFGTPDDDGAREDSEGLREMDEVEADYAGLGTFYRGNVARDHGDDTYDIVYYRYADGERVRETRVAERLIRKPGV
Ga0186297_102133	Ga0186297_1021332	F070163	VTRKPSGSLKRKARPRDPRGSHLRRIPCLQTMRSADTGESRLWCGHLRECLGGVAVKPDELSRRWRALPWAKQRELFKSWAQPRASDCYPGDLRLSWWWDLRSLGFGHYAAWSDDDISTVVTKTTYYQVWLSASGTRVHRKVSYSMTLPANLVIPVVLAAGAFVVAGLAVGAAKLVLWLW
Ga0186297_103662	Ga0186297_1036621	F063757	KSKFYGAFVLNHRVDLHAIDATPARWRGDAGSSPLDGARTAASSPRDDLVSTRHTG
Ga0186297_105480	Ga0186297_1054801	F017397	GRSVVPPGPDCLSQCINQIVAARPPLNHDIHAIDAIGSMAWPCGLPLLDSVSTAAFSPRKDLVKNYLNAPDSLISTQVGLISDPIFVCYGIYMVLMSVASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKSVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARNAGF
Ga0186297_105732	Ga0186297_1057322	F039006	MSLHDVMLSNDDLLAAIDLTVDFHGNEASVEEHGMVLLDVNRNHLCVQHEADLDQTEWWPTAHCMFGLQACLDNDGSTTCDQAESGSEDDLTLSGGETDLANCDCSLDGVTSYCLSKYTSVEWSSLDKTCDVSRLAKKSSGRAAQADDGATLWVTIDGIKYTYAEGAAYGGTNTEEGFGAWAARVMGVVCQSVQNAGQAVPESCAGYFPPH
Ga0186297_106112	Ga0186297_1061121	F081388	QDRDPCAGGEASATRTHLSTDLPSKLKGSQPAHSPIDTMARPLLGALLLARLATAQDIDIKRIENPGVVLYKTSGPLPEARLGDDFPGSFPARFLRQAWGLEGPHSPEGAALVNATGVCTSSEITDEFFGQAMLERAKAMFDDRGLRHELDAFLQSGVSNTHSPTPRRMYWVGIDILPNQSLALHSHPNVEFVYVAAGVMHEWRCPKCPVKRKYIPEEIKTNGKTIEKYWGPDLHKVNAKARGMFRHDAYNAGDMFINAIGDVHQSYTEEEGVKLLVMWGDGNADVPLEQLPRHSDFLNVGAAKAWD
Ga0186297_106557	Ga0186297_1065571	F077349	MAMAFARMARQRHVVGPALLAASTIAFVPRATVCRGTTDRFFASQQGGSEEDDVARLRRENAELKSKLARQKEPEGGGFLDGLAKTFGFGKTEEEKALEKQKQQMDNAIDEVFKGGGLVGGLMGSLAKGVVGAAGKMFAETQGDMDSVLRAIENRLRDRLGDDVQCAMPMQQMYSSSSINGNVVKQVQLVTQAQGSRGSGVVRATASIDGAGNVSINSLDVDGSSVAGSVRGSSGGKNDVIIDV
Ga0186297_106980	Ga0186297_1069801	F096036	MMARQAALVAALCASTACALLAPPQRVRFMRPLKAAGLDPSSPQMQAEFEKLKDASRGFVEKELELMGIPHSADMDDMTIKLRLMEARIVMAAPAAAGPAANASPYEKLVFEKPAIKAYVDRLYNKGDINGANIFMEYINDPQQAQNRYGKEADYQAVFAKADELMAAPAFTSAKLAYSGFPMMGEDGLRGQMESIGAVKAFSVTEEDPVTGMTGTVEFEAEADAKTAVEKWDGADMGNDVMLSLKYQ
Ga0186297_107197	Ga0186297_1071971	F023863	MARRCLLVLALTSLSAAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMGAGQVPAMGGEL
Ga0186297_107418	Ga0186297_1074181	F017306	MSSMMDNLQLSQRVGPSDYGCDPYQVVVSTANGDELVHEYCLYSSAYGGPVRPDAVTGLRAEPTGGGRATIKWEWSGNSFDLASPGAYFERDVIVEEGRLAWAGPVRKTPKTKAVAPAPKVEIGAPLRAADVAVKSEWRMNGCDDEWEIHVSHAPTGTKLVWKGTSTAENQDIKKLRHADVDGVVRIDFLYYVGENGNNSASDRSLLVKLGAKGLEWVPKHVCSGRLYDGPCSGCE
Ga0186297_107861	Ga0186297_1078611	F100442	MVQIHEVAESTKEATDEGAKVTTVSEGADATAAPPAEDKKSLLMSLGLPEEVADAAIASDGDGFKDGASRVSMFYSLKVNDDAKAEWKDHYLNYTKGAKASKGHVNVSHSYNEETREVICIETITGKDAMSNHIGNCLPHYAQMLGCGVVMKEIICVCDPAEMDWFKASLAAWQPERMVCTPDHCP
Ga0186297_108204	Ga0186297_1082041	F033072	MKLILALAVGATAFGGFGKSAAPAPARGGGNQVAQGGQTVTNIQVPKIFTTAFGDPGRLQERAARAEAKKAEAEAQLIPTPARFAFAFGRPDILAERRAERLEKWQWSDEFLAKARPDKGNYGQGDVYDDGLTKLERTQIEQGREAYLTGGAKLRYKRLTGQI
Ga0186297_109076	Ga0186297_1090761	F067780	LLAAASPARALLAPQTVTRTQTRRNLATTPDEISHAAHYNAYDYNAESQGASEDDWRSMATAAGAIDEDPAEKWAGLFTPWDASQETAAEDTSLEKIYAVQRDPVNLPPLPQENWGGMFSPWEADDTSLNKIYAVQSDPVAQVVPHYEVGFEPEEVPQAGVAPWNAIQA
Ga0186297_109079	Ga0186297_1090791	F105005	MYKTALLALALSAPALAIKKPAHGAAALRVRGGTFGFDAHQTGEQCGIEEPEKEVVKTIKSAVTYPLKVLGIRGGALLDVSARETAEACEIEDPEPLVVRTIKAAFDYTAEKVLESGVVPDELVAD
Ga0186297_109554	Ga0186297_1095541	F075316	GAEQCALALREVVEERAASLRTVSAPALLGRPIGSDYRSAARLQIGSMGLNWIRERRRSSDKEVVQRKKVVNPDTGETPAGYNKMLRDCARIALAGASATLLCGWPHVALVASAVAAGLLQQGTTYSIKNWKWTAVSWCLLPACLTAWFLRSTAGMIDPDRGYSIYIIFVMVGRFTEFAAGSTVAIFLAFALAAPPDKSGEAR
Ga0186297_110545	Ga0186297_1105451	F037241	MRRLLLPLLLASTTAAKSTYWKEVEAKKRRPAAAAYCPKRCFTTEASGDEKREVADLTCCSSAQGTIFELAAFVAATTETAVRGFSLGFGYVLVKATLRAADSDEGPRSGHDFGPAYRFARMAGLGVACSFVGLSMFVPVGLRLGHRLA