3300016915: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with seawater, 20 C, 33 psu salinity and 485 ?mol photons light - Phaeocystis cordata RCC 1383 (MMETSP1465)

Overview

Basic Information

• IMG/M Taxon OID: 3300016915
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212090 | Ga0186378
• Sample Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with seawater, 20 C, 33 psu salinity and 485 ?mol photons light - Phaeocystis cordata RCC 1383 (MMETSP1465)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12646756
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Haptista	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.9
  • Long. (^o): 14.15
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003766	Metagenome / Metatranscriptome	469	Y
F009123	Metagenome / Metatranscriptome	322	N
F010660	Metatranscriptome	300	Y
F012191	Metagenome / Metatranscriptome	282	Y
F027998	Metagenome / Metatranscriptome	193	Y
F042125	Metatranscriptome	158	N
F074299	Metagenome / Metatranscriptome	119	N
F086477	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186378_104491	Not Available	957
Ga0186378_104500	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	955
Ga0186378_105619	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	813
Ga0186378_106027	Not Available	770
Ga0186378_106572	All Organisms → cellular organisms → Bacteria	713
Ga0186378_107172	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	652
Ga0186378_107225	All Organisms → cellular organisms → Eukaryota → Haptista	648
Ga0186378_108546	Not Available	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186378_104491	Ga0186378_1044911	F042125	ASAPLCRGPMRCLLLSAVALVAGRSVPAAKGTVALLTPQLQDGSLDEDVACGTDCENRECEKGCSAQLFCLPDACAAGEKCITEPSKCPDSSDAFTAAMCFQDKTENNPCPAERRAEMCADVKGKVCADRLGHQHRDVQAPLEWKAAHVKKGECVSIIEGTDDEWCRKACTTTDHGECPPDHCVCGDLSDIDMTPVDTVAQAKKNADDLKRLMDSACDFDAQGCSTGVPVPQCNACYIHFEDCRNKAHFEDDMITVKEMTLDDCMDMVAANVAECSTCNTDDSKEAYKVRTGEHDPPGVSQPVKQR
Ga0186378_104500	Ga0186378_1045001	F009123	MLSIVGLSATANNAEVTTSNLRSGAAFDNLKASWGKKLSLGDFSSQLDCSYDYNANRDFLKSASLSGNLVDGSGDDLSVGYEVTKNFAGDKTTEVKLTADMSGTRLTAEMDTADQLKEVSAARTVSIGDRDVDLEPSFLVKAQTARVKLMSAFGKDRASAQVDYKTEGGDISYELGYERDLQDGRQVSATLTPADKNLDVELVDTKFESGATWTAKASVPLEADNVLDAAKVTLKRAWNW
Ga0186378_105619	Ga0186378_1056191	F003766	TLAATALIAYYVFYGLRGALGDDTAFPDAVKPVKITYVQGLGYHMLMDACFMIGVVVNDIAHVMMPFFVAAMLVVVYSQCIIDDLPGAAPAGAFALVFAYLARGAPVWEPIKWNLATIFYSLQGLLILLVGIAMLFGDDAVIPEQMKPLNSSQVKFVGTTELTLSAYLFGSILTGHAQAMQPFCALFMLVALVLHAVIGDWEGCPLIVVLAMAHLCLGLFWKGKDEAKKQ
Ga0186378_106027	Ga0186378_1060271	F086477	MASAAEPEEISLKWRQDKLGDGIQLDSETTTVSRRCQSGFGVQLADAWFTKDITTVAIECHELTDDAYIGLVGRNYNPCEWTGKLSESPHAVVLHAGTGRASHKGSGTTFVLRKLRSGTRLVLTIDMQKREVTFELKLGADEKAESTLIVEDIQAEVAVAVCLGPGDQSVRLAGCVRSKPEFLLLGKRVKDFWDEENVVPPLGPNAQTKSNEEKMREAMSSASGILGAGPTSLVRG
Ga0186378_106572	Ga0186378_1065721	F027998	IQFLFYDRTILSEELTNTNAAEIGITTITTAKITLLKNALNEGVILI
Ga0186378_107172	Ga0186378_1071721	F074299	MDVADMRASKQARASLVNDLNNLKRVVETAPPEFADAPPETKVWAFQGHMQRCVLVDRRNPEKFDTSNARYNSTSWKIGARATEINPVSGTHSYDTGNLYRTVHWRPVGQGFGLNGYFTNDLARAGMWRQEGLNCAMTQSNTLERPAQWGTPKNAVSFM
Ga0186378_107225	Ga0186378_1072251	F010660	RVAEISMLRSFQLLAFLAGASALLVSPLAAPHASQRIAASPQMACNGGKGGSGGEGPPLDKMRRGRLGALIQSADDAEKVKAILISSQTERLLLNMNWKVRSSMQRQLRKRAAQFGVEVPMDFAAYNVRPRNTPKKSLKPTITEESAPHPDAVAALAKLRFA
Ga0186378_108546	Ga0186378_1085461	F012191	MSAALRSSALSQLANRAAARGMGAGMGGGGHANNPAFMFQADYAKNKWKGAVFVITCAAVGTLIPWFSVRFAQKKAGVEW