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Sample 3300016908
3300016908: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with Sargasso seawater, 14 C, 36 psu salinity and 164 ?mol photons light - Skeletonema marinoi skelA (MMETSP0918)
Overview
Basic Information
IMG/M Taxon OID 3300016908 Open in IMG/M GOLD Reference Gs0128947 | Gp0212287 | Ga0186575 Sample Name Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with Sargasso seawater, 14 C, 36 psu salinity and 164 ?mol photons light - Skeletonema marinoi skelA (MMETSP0918) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 26647525 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Alternative Ecosystem Assignments
Environment Ontology (ENVO) marine biome → estuary → estuarine water Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 41.57361 Long. (o ) -71.40861 Alt. (m) N/A Depth (m) .5 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F034938 Metagenome / Metatranscriptome 173 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186575_109199 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 1132 Open in IMG/M Ga0186575_109586 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 1087 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186575_109199 Ga0186575_1091991 F034938 FTTPTNSNITMMNAAFPNAQRMHYEGAASSSTGHRTMTNEAIILPKISADDQVAQRDVEEESNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVTNEGTVYDPNRNLVAIEAMLHHQPGQPKPSFWAVKDKDASGGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY Ga0186575_109586 Ga0186575_1095862 F034938 MANEAPANVIPIPNDEESVASNADKDMVKWRGNLVPREEAKALRHVFDDLKDHFGHQQPDPHVRANVTSFKHPGHGLMWHGNLDFTYQIEGEHCNLGYIGMDVCIDLIPKKCQKQGEPTLKDYGKTWVYVYTPQETLDKFIKYVKIGTGWVVSTDGTVHDPNRNLVAIEARLHHQNDQPKPSFWVAKNRDASIGDMSFSRIGSVQEVNETSAQQRVHRGIGIFSVSLEVEGTPNFEPTPGNRDDANLCFTLVSVRTWGITDCVAPIVHAPSKWF
