3300016885: Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium, 4 C, 35 psu salinity and 113 ?mol photons light - Micromonas pusilla RCC 2306 (MMETSP1327)

Overview

Basic Information

• IMG/M Taxon OID: 3300016885
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212299 | Ga0186587
• Sample Name: Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium, 4 C, 35 psu salinity and 113 ?mol photons light - Micromonas pusilla RCC 2306 (MMETSP1327)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19118737
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Arctic Ocean
• Coordinates
  • Lat. (^o): 70.55
  • Long. (^o): -140.8
  • Alt. (m): N/A
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065351	Metagenome / Metatranscriptome	127	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186587_107609	Not Available	851

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186587_107609	Ga0186587_1076091	F065351	HQYYMEAIQREQHAAYMRDLRQSREYKDRENKLRVLGRIKEGSVPHVYSLTKYNITRDDINDLRRRNGFDDLIETIPYWAEATRLRRRNMEDPSSYVPEAPPAQPAPDLPDRVGTAGDANTESFSVKAINTHFRTEGREIGTKTNQRAKQGTVSRQFGPPNSGEKSGSFARFMEFLGPRYLEDARELLGRNTLRHIETEMTKKHKKERKPPPGQSEFIQLSTMVKLLETVLIVLREYPPFDALCRVPGKSDDDCEQPAQESVKKRYEEIDALFNKYDAQVNAA