3300016873: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 255 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0945)

Overview

Basic Information

• IMG/M Taxon OID: 3300016873
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212217 | Ga0186505
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 255 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0945)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12009075
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine salt marsh biome → saline marsh → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018377	Metagenome / Metatranscriptome	235	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186505_103838	Not Available	1042

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186505_103838	Ga0186505_1038381	F018377	QKQVMLKAVFLSLALVAVACAAPTKSIDTYISPPTTVVNPISSNATVKYVKHHHRATLNFACPVDRITVTPNFDNFAVGFEDPLTQIELEDHIGEPSNIEWAHVMQMHFETTDPRGQERQLGTVGGDLGEMLLVLSAIEAQTGKEFTKVEVDRLFKLYLTVMSREKFYYSIDAIENLKQACGCPQLNIADPPEAKKQILLNSTHTAGSHGDEFFKKMINDPAPFNVRKQLIHHTTDAFYNVMWNKTSPLHRRVKFVLVKGELDPKGFILIKTPGYCNAQLLAPMISPELCNKQMGIYHGDAAVLLRTEIAGVLLSKTPEEKNAVVRKANELAATALSTLLSDHNEPV