x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300016863
3300016863: Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 667 ?mol photons light - Florenciella parvula RCC 1693 (MMETSP1323)
Overview
Basic Information
IMG/M Taxon OID 3300016863 Open in IMG/M
GOLD Reference (Study | Sequencing Project | Analysis Project) Gs0128947 | Gp0212059 | Ga0186347
Sample Name Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 667 ?mol photons light - Florenciella parvula RCC 1693 (MMETSP1323)
Sequencing Status Permanent Draft
Sequencing Center National Center for Genome Resources
Published? N
Use Policy Open
Dataset Contents
Total Genome Size 16302589
Sequencing Scaffolds 1
Novel Protein Genes 1
Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type Host-Associated
Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location North Sea
Coordinates Lat. (o ) 59.31666667 Long. (o ) 4.31666667 Alt. (m) N/A Depth (m) 10
Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F102200 Metagenome / Metatranscriptome 101 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186347_105016 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula 955 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186347_105016 Ga0186347_1050161 F102200 MVSANGATIACGVVAALSVLAALPMLMGNADVIPESLKEGTIVDKKGTLKAMDPDLLAHFARSVGHEVFIFVTCVAASVANNRCALLAKFLTCGMLLSAGWHHAWGNENEVIGQVVLATVLGYFGFIRSGLTLPSTTWGKHAIACTLEACLMGAVALGLLSGSAEALPPALKSLNLGAVQSMGKDLGLAALCVLAGALDNNAPMLCKFLPVGIMVSAWSHAMMDDMQGAKLNSCFALGFAILGFGFAAPETGGKKAQ