3300016844: Metatranscriptome of marine eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 704 ?mol photons light - Skeletonema marinoi FE60 (MMETSP1040)

Overview

Basic Information

• IMG/M Taxon OID: 3300016844
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212326 | Ga0186614
• Sample Name: Metatranscriptome of marine eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 704 ?mol photons light - Skeletonema marinoi FE60 (MMETSP1040)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21972543
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Adriatic Sea
• Coordinates
  • Lat. (^o): 43.5
  • Long. (^o): 14.5
  • Alt. (m): N/A
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186614_107044	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1133
Ga0186614_107481	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1072
Ga0186614_108069	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	993
Ga0186614_111644	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186614_107044	Ga0186614_1070441	F034938	MNAAFPNAQRMHYEGAASSSTGHRTMTNEAIILPKISADDQVAQRDVEEISNANVTNMVLWRGNLMAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQPGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186614_107481	Ga0186614_1074811	F034938	MAANEANVNQNIAAQNEQAGQIDVDEDPNMVQWRGNLVTEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHVSLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPQLSIDRVKSYMKAGTGWDVSGEGFIDDNNRSMVAIEVKLCNESGQPEPSFWVVKDKDASGGRGSMSFSRIGSVQEVAAQPHQQRIHRGIGIFSISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLD
Ga0186614_108069	Ga0186614_1080691	F034938	QQSRNTLHLHYALETTCLTTSSQHHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGYHDEEETMVTWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGDVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGETWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKAKLNNQAEQPNPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDNSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVANLVFTLVSVRTWGITDCIAPIVHAPMM
Ga0186614_111644	Ga0186614_1116441	F099352	MVFNGSEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS