3300016835: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 676 ?mol photons light - Bathycoccus prasinos BCC 99000 (MMETSP0933)

Overview

Basic Information

• IMG/M Taxon OID: 3300016835
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212099 | Ga0186387
• Sample Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 676 ?mol photons light - Bathycoccus prasinos BCC 99000 (MMETSP0933)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14978062
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	17
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea
• Coordinates
  • Lat. (^o): 3.6
  • Long. (^o): 43.4
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008555	Metatranscriptome	331	Y
F037217	Metagenome / Metatranscriptome	168	N
F043073	Metagenome / Metatranscriptome	157	N
F044280	Metagenome / Metatranscriptome	154	N
F044472	Metagenome / Metatranscriptome	154	N
F045998	Metagenome / Metatranscriptome	152	N
F052354	Metagenome / Metatranscriptome	142	N
F053028	Metagenome / Metatranscriptome	141	N
F057841	Metagenome / Metatranscriptome	135	N
F065375	Metagenome / Metatranscriptome	127	N
F070819	Metagenome / Metatranscriptome	122	N
F075607	Metagenome / Metatranscriptome	118	N
F075610	Metagenome / Metatranscriptome	118	N
F078157	Metagenome / Metatranscriptome	116	N
F080815	Metagenome / Metatranscriptome	114	N
F082736	Metatranscriptome	113	N
F088834	Metagenome / Metatranscriptome	109	N
F091243	Metagenome / Metatranscriptome	107	N
F093165	Metagenome / Metatranscriptome	106	N
F102591	Metatranscriptome	101	N
F104366	Metagenome / Metatranscriptome	100	N
F105106	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186387_10235	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	6304
Ga0186387_10390	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	5212
Ga0186387_10431	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	5034
Ga0186387_10540	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	4679
Ga0186387_10562	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda	4613
Ga0186387_10706	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	4236
Ga0186387_11391	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	3132
Ga0186387_11439	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	3065
Ga0186387_11543	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2963
Ga0186387_11658	All Organisms → cellular organisms → Eukaryota → Viridiplantae	2839
Ga0186387_12418	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2233
Ga0186387_12515	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2179
Ga0186387_13557	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1621
Ga0186387_14471	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1213
Ga0186387_15287	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	894
Ga0186387_15318	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	882
Ga0186387_15354	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	865
Ga0186387_15442	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	819
Ga0186387_15614	Not Available	749
Ga0186387_15622	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	744
Ga0186387_15832	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	662

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186387_10002	Ga0186387_1000216	F037217	MTGNVEKTMNYIVKKNGVWTIYLNVYKTMDFFGRVVVRFSDATSKLISNYIAKHRLKNGEHLFGTFDKDGKMSATVAAWLVEAGIKDGKVQGQTKTPGAINLLRHAYISQKIKEEDVIKLSETMKHSPLASELYVRKIQPLLVENMIKSE
Ga0186387_10235	Ga0186387_102351	F080815	LSNSRDEALIVLKASGACTSLSIGSAEMCEAFVDNLREMQSVPTWMHVNVTEIFKDASSFSSVSLMLDREKKYYEHTKCAPVLSTLTSWCRDNIKNCATVSDVYSGATVGTTLDYLSPLKQGGVTNIDEIFNRTFSPRGLLLPGGEEKRTTEAKRLQDSVVYAAVIMGAFFTLAGLVRFFRSRKSLEVVQVI
Ga0186387_10390	Ga0186387_103902	F053028	FFTTNSLEYSLSHRTHKNTRVKGIHTHRTQSKDEIKMLSFLHPYVAVIIDFIESIDDFMEKNGGEFNSYVLSIMLIVIGYAKFIQKAKKAKGLNQKTQGKLELFAGVNLLLPSKMQTEIGCAIVFFVLGQQIFTKTKEAKAEVLMSFFAKQIFRETWMRNNNRTSLTFLPNNVNEYGPVNVMYFAIFIGMVSGAYLLAKAPATQGSGAEKLAEEILKEVEKRQESKKTK
Ga0186387_10431	Ga0186387_104311	F057841	GELFTTATRRAGFALRLVRGRGRATDSSRKKTRARMKTPDGEEPLLTSSSAEYGAASRDEVRENKNTPKLLQSSKEANSTTTTGMLFFQSFDDQHPAIFWDNFSTAMWLITDILWTENNSLAVCIAPFVVVGYAKAFFSFQGEWERYAIDLARTMALCFWILANTVWLFQELTEEKRRTRVDATFMMPYNAGVILTLLAMTVVIEPGIFLYYRSRGINCFEMNTVLKPIGNMGITFWAAKDFAWYLADEEMLREEYRWIPKVAWVIADGTIMFQLFPLFFKALQGWGIFSCFSNYASYKQKQKTFMRRFAHVIDELAMTSWAVSMTLWSFGEIFMPEDTFAQKLAKQPNYPNLRWWCGHVLIFGGFPFFVKSAMEVFMEMSCTAKSHRRRTVALDT
Ga0186387_10540	Ga0186387_105402	F052354	MVVSTRSFSGKTKTRGEPLLTFSQCVFLISLVNVLGKLADVLILILGQMPTVLLLLNANDVNLTIASAANMPFYSFILIGVVRRVIEDCLYFFSGRWYGKDIVAYLTKENRRSKWLKVSKAKVRESERLMRQYGVAILLVLPGALTCFAYGMAKRGSRRRTFLFLDSLGAALRVVLFRVAGKGAKKALGLSAVRYLAAVGMKYKELAMTVGGTVLAVIGAGVYYYFYY
Ga0186387_10562	Ga0186387_105623	F093165	HQTTSWMKHEEDEQRPNNTNNKSIVISGKVLVLFVFVSLSAMVFLSYFPPATTSSSLNVLDKNAEEDDGLLLPIAKEELEEVWKEEQGR
Ga0186387_10706	Ga0186387_107062	F065375	MESHVILSPVFEVLSLDFCQNKKESQKRSRRKSNEHLNLAVAELQRISKSQLVSRKDAMAMLLFIWANCDGYEQNFFPTKSEYDDGVDALLKRFRVSTEAFVHVVLSCDLLHEFKLALEDANDTYLNERMASAVFSLAQNEASGQIVDIIEKQKTDGGDGKYRTPFLQNNTIRRLEMHKYVGEMNNNDDGNSFNNSSHFEGVVEKEMVKVMNRINYEKQMSVKEAVQFSRSLLPLKLSSPAKFTQLLLHYAAENSSNMPLILSAAYNSPGLIELEFFIRAFRELVATKPHLLTTLNTFIPSLFNEDMARMHTDDNGNYDSSLFDPREGILYVVLPLLHSSNESGILEFAIHLLRDITINDTQFDYTLVFRTYPGSILLSLASVVNSRNADDGCSERVRELASSTLSVYVDRFGQLAKEKRIHLTKHALGSIEKLSSVAVSHLDWDTRLRIEPVLKYGRRKHGSVSEKPPPSLNCKFDSVTLWIKKVLEDIFCISRSGDEALSRVLRLLFPFEREVLEEREEFDSNIDACLIQFRSILVEVSVKYRDHLKLALLWASSEVFPRCTFSEIRRIIFGLFPKLLPQFLNTFDVSVRAYEDEIATDGIALDLFVKVIETTQNTIDFEILTRQLANIVSSSPRESFAFQLLGFRNLCSALSIVSMSSRGGSKSRAEGALSAAAFDILAKVVTSSESEENKRKKLEEMLEVLPKPALPDIVKQIKLEISKL
Ga0186387_11260	Ga0186387_112602	F104366	FPHFSAVCLHYDREVMTTSRPNASWVGPSFIRTLLPFVSSPLKTPTTAERARDEEVLLLKPSPGKENESDSDAFLDGQEASMKTKKDKRTPPSRGVVIAAAVLTSFVVVLGRESVGKGGFDERMRFKATRPFLGGGKGGESVEGATTNIEEEKSAFVAVRDLFKYESRILSSDAEKENEEDARKRNYEMDDGALFGASCQWGSIRAKINAEVFNNNETTSRENGRKLFLFVRHGEAAHNVWGERRKGEAPMPNEQVPCTDEVTGKSLLDPSLTQVGLHEATESGKALMTYMEKVFKESGEEEAKRVAFFTSPQARAIETSRLAVLHTSGVKKYQSASGKSIRVSDLIRNKIDLTVPFEIRRPYSFEDDLTGDPIQYGGLSRALAKREEKYLEGCEFTKTLGDITSIHENDDYEIAARENAAQETKCRLGEATSDSVFTCADELGLLVNSDGELRYESNELSMQSVRDRMRVWFANVFEEERDAKVIVAFVHSDIIEGALKELYGDDMKSEYKALNGDVVPVLVKDVRPKEYLNFWNETDY
Ga0186387_11391	Ga0186387_113911	F044280	MNRGKLATWLLVLAVLVARVPVFLNAKTKNTFAPIDGAAAFATNYFSGTDDDGAPLLKPPFVARALLYPSKLVPQLSQSLKCNAKENMKVTSTSMEGGSERNNCLPYFPDFESFTTRKEIMRTHKRLVKTFGEDSRTIHVVYIGSVLLTYSAAFAFFSGTCGRVGVYAIALLALGTLTNSGKRDGAVPLPGLFIISALTFTSMIFGRNTKRRRTKKQKTR
Ga0186387_11439	Ga0186387_114391	F043073	MWASLTSSQKVILVSNLMGLYYAVMLLGDKIGLPIESFGAKFYGLKKASVVQASGASWTGVFLCTILADAFYVCFKCSEGARLRYCNTALIMACQRLTLQIAHSTQSIRTVAIPVVAKEYTAGLISSFVFIGLFSSVSSTSRLPAGSVWYKPATTTAKCLFGMTLGCLAFFLQMITTDFLAAVSNVKGKRTAVEYAQLDWCAVMLMGLIFGLLFAQMYLTENEQIGFAKVRVGAILSMMYLAYTEKAITPCKNYKESMRMMGAILALAVYAAHGKDIMKKLKRA
Ga0186387_11543	Ga0186387_115431	F075610	MRTFVFLMMMLAASTLSMITPTSAQQNDDEKQTMIDHDGTDHYSSRSVRLSSDTTNIGSNERKILIENDYEVTYGTYFKIVRMKCGFDHAVKNPGKCTKNTYVLRKRGTDVPTIDPNTNEMIELVSEDGTETRHFEIPATSIAVGGTFALAYLEALDVDAETLKLIDSQYMHSPCMQLAVQNGEIIDQASAVYDPVDWSVDTTAWSAKCDELNVDLTFTDEYGTGKCGNREEVNVLFHGNADDTAILRAEWVKFVSLFFDKEQFANEYFALESDAVEAIKTYVEKGIVASLSEKKTCVWVQKMGSYYEILHDTFRTSLCVDAGMLAYQGEAGFLKKAFAIDTQQEAFHSAIRDYDVVVDESYFYDVSSLNRSAYESNLAFDQLSGQTVKAKDGNGGLLLRVDASRGNGMTDDLKESGEVRPALLLNDLVTNVYGGTLSNDDACPKYFRNADESAIYVTHENCAALENADNEKKCVTDLKEEAERKTPSALFADSSAITTRDAIVATFGVSIATALSVLFAIA
Ga0186387_11658	Ga0186387_116581	F091243	RKRTQLNKHNTMVFFVPRFAMLTTLFAMTVSPPSLFGRNGLSENVFVEAIRVPDFTSGMKSKFSMLAPRAFTKKNKNKDEDLLDAAYVDEKIVGWDAVSNQPIYDENWNSNKQLLEKYNPGSTERKDLPSYTHVPSKEEEQDWLYKGSENAELMKEYERRKKVTEAPPAPILQGETTKSVDEALLSGMSPEERGKMDKSLTAFQRKVMNAMLGGSQAGSDDCNVDAVKAGFLTDRQMRHLKEDKAKIGKDSFVHAAGKLSKGAHLQRKLESDEEMRACVDAVVVNDMCDRAAAGAYLNKVLRQAEGMWKKMQGTSIRDHARYEPLNEKAVLARDRWGAAKKCVDVMMPGYWRETVASEKYRKREEGISEASRVFKAMGGMEKGKVKINGKKIHT
Ga0186387_12418	Ga0186387_124183	F102591	FLTHINTYLYTRTKMAPTTQQKILAAYNGIYGVTLYHNWVKYYGPKGIAPYFLKTEGAVAMMAFRMFACLLCGFAYGLLTAGPKDKTALKMTCFAQALMLPLMVIAGFGPDATTYAQPMWKAQTVIHSVMTYVAYTASQGAKTRASSRRR
Ga0186387_12515	Ga0186387_125151	F045998	LYRVYPQHTRKKHDHRTHCCDTQQQLYSNIIKMGKINIETEVESVLSEQSATCEKLKIRVSETVEGVNLSAKFVLPVNVEVSSKGNLDANMQTSKVDLEAAKDFWKIKLDDVDQNTQNIMDVLKISVREKVSAIDSTATLEWKAKGNAVKGILEPPVFEGVKSTLEFDNSKKQLTVTAKKKIDKIDVSVKADANVKTQTFKGGKMTLSYPLPEGVKGSLEASTNGSGKITLRRGNLSAKMPLKNFTSAPNMNDVKLEFNYSTDIASF
Ga0186387_13557	Ga0186387_135571	F044472	MALSTMIPSVTPSNALKAHAIISILFSLPVIISGAGGFLELISDGAVKSAQMKGPIAQLLIHITYVDFVKNWYVSAISWMCASKAVTVQKMVIKINLMMMAGALLALIYSPPVAGGPMVPPPVLAYFSTMCVLYCLALQVPKKVLKMMPSLPKIGGSSAAPAKKKATPTPARRTPSRRR
Ga0186387_14471	Ga0186387_144711	F105106	KISLSRIGALSKAFTTTRRRRTPPPPTTTTLGSEAWRKKRSKRIRSDYVLSSFNSSSSYFKLEKEEEGEEILLLTPEEVIENLPSILLESELEGTTGDDTNKGVVDLVEFSTLCKEYVKNNGDVDALVRKFSESEYNSSQFLEAAFDTVYDAKMAMRKNEVSMEVFGAFQEICLICAKAFRKRNMKPEVFLADECVKEISQSRYKAKLFKDDEAIERARWKVRRMLVESFVDKELYGSKEVKEEGTTKQTLLDFAKFARQLSICRSTALEDMEKNISFATERMGMSEILIEGATEKALNKPDDLEITKKAMERVVNSVDEVLALCLELDLEKKNNPATTRVMKAEQLLRKNREFLDDGDENV
Ga0186387_15287	Ga0186387_152871	F088834	RHGKREFKAHTFIIMFGNSSSLKDEEAITNSSDKQTTTAAQLAAMQQRKDNQYHARMAVYDWLDRLVLDKKRFLTTFLAYSFCVCVLGVYIGDWNSATMPGREQGQWCAMQAKECKRQADVCLVSGGARAGASQPMVGLDKERAFMDGGDIGGTDFDGAGVPQHIQQMHSEWTQSRDNRAATVARLKELRVNLLCHELRVQQQRKKGALDYDRINSFMGKAGKAREEYEKLEAVVKVVYPEVIPEVEELDQMKNPDCKHVHGGRV
Ga0186387_15318	Ga0186387_153181	F008555	PLSLRTRPHMIYALTLIPAAVLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0186387_15354	Ga0186387_153541	F078157	MLYISCLQPTGVSPALNNRRRASSSSSSYVSQQKTLMKKKKKEEESAACQFTFLLDKPGCMDARMDEDEPCDVNLECPLEPFDISKCLKRHKGVLKMGVNHAVRFTLNAENLFVSPLPGSTIFLDDEVVTDKMTKMLEDGSRLRFAKSEYVLISEGFCPLPSWEAVISSR
Ga0186387_15442	Ga0186387_154421	F070819	MIRKTADTASTRRSSAALPFLCAILSFSAVCLVVAMSCLASGFVVASGGVGNNNNMQEKVTKNLRTRLDAVHTNDIDCNTCVRVNEFLHAELVEMEEETNVDAIENEEELAKHHAKEMKTRKRKLLHGRSEPKIRDTVLHACVKCADYDRKKTYYLQDHDCDACHVILFGGKERGRVLLEGKDGEVEEDERRLGHAFHALVDHTFELGTPELQEMVDFLCVPHFCRVKEVEQRFSGGFEGARHEEL
Ga0186387_15614	Ga0186387_156141	F082736	MLSRLSLSSNLVGFDTGSELCLLSSSVFLRFFRSRYRFFLFLQHKLDVARRRHVRVDATVRSVRSSSLRDGLIDLDVRDVEIVNVQPLNLGIRFRVLEQVDQDLRALLRPSALAVRGAFLLGLGRSPDATAKSAKDDASLHLHNRVQETLRVAQTSPLDVHRRFSHVLKMNSQIRASSFARFRRVVGLSRVFHHGCFPREFVLVF
Ga0186387_15622	Ga0186387_156221	F075607	MSAIEVQEKQQDNLNDHTTFVATPVVESVDHGGQKVLNFLGINCATARCRHCFQTVPHDHEDALLVDEDGENKDTSNNSEPNTPKTPCDSHSEWTKTFEVQRQNMKSANIPKTDDEYKKSVFTPTDESSTRLYAEMDALETNAMINERLVSGAVKNTVKKQ
Ga0186387_15832	Ga0186387_158321	F080815	LSNSRDEALIALKASGACTSSSIGSAETCEAFVDNLREMQSVPTLMHVNVTEIFKDASSFSSVSLLLDREKKYYERTKCAPVLSTVTSWCRDNVRNCATVSDVYSGATVGTTLDYLSPLKQGGVTNIDEIFNKTFSPRGGLLLLGGEEKRTAEAKRLQDSVVYLAVLVGSFFALAGVARFFRSRKSREVA