3300016834: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 728 ?mol photons light - Chaetoceros debilis MM31A-1 (MMETSP0149)

Overview

Basic Information

• IMG/M Taxon OID: 3300016834
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212311 | Ga0186599
• Sample Name: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 728 ?mol photons light - Chaetoceros debilis MM31A-1 (MMETSP0149)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24361616
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Chaetocerotales → Chaetocerotaceae → Chaetoceros → Chaetoceros debilis	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Ocean
• Coordinates
  • Lat. (^o): -49.6
  • Long. (^o): 2.1
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068121	Metagenome / Metatranscriptome	125	Y
F079510	Metagenome / Metatranscriptome	115	Y
F098600	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186599_101723	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Chaetocerotales → Chaetocerotaceae → Chaetoceros → Chaetoceros debilis	2688
Ga0186599_109167	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1021
Ga0186599_111912	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	705

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186599_101723	Ga0186599_1017231	F079510	MKFSTFTIIIATAYYPSSVVGSSQCVVPLPLNADDFNQPDWATIIEGVFPTWAVPEGGCPRLDKVGGSLVANYTDFPVAEEGKFNPCYYTKAFAGLDPKYGGYPTPIDTHYHYEFAAPFFGQPGDGSTHHCPMNADPSTKIQSCPKIAPKCDGEGGACNKITDDYGIGHVPPFVPLAAVKNAYFGCGEDVCKWFSDKVNPCNIPKDVVDRLVVEYFGTEAGNIQFTGPVLGNDLPVVDNPKSTYYKLEYGGDAEACADNNCRGPHYCSKEAATEDIWGDFCPYIHTGENAGLYRHPHLALAALELWIANKCIGPAICPMTWLDSPNGKKNDYGDKMKSTSITWAEMDDNNDPIAQPAVPYKWPNAGDGIFPGHELYGDMLIKPAGGTYVTKYVAMGSKRMDDHDQTSGASFFGGLASSIVMISSTIAVYLLV
Ga0186599_109167	Ga0186599_1091671	F098600	MSKKSFALAWAVVYFCRIVLITNGIIYARSGIAYYSQSYDGFELWEDGNSTLYSFPVLQPVIKDAVIEDQFDGLLILAPFMGAAYICVAFTSIAAAFLFRNPEAAMTLLLQAALLSMLGCIVRPYESAEFYNEGQQKKVQSAQLVAVITGWIGGLGPIIAVLLKQKILTPVEYVVTLYSSFASRDEGDAIE
Ga0186599_111912	Ga0186599_1119121	F068121	ATSPSRIRHVLRAQSTDDDIEQMIGLSRKEHENRNQLNELPKGKISPSAEDPTIWTDANNRPWKLNAEPNAAYHQPMPVAVAFIRAYLGRIIPQLKVPNLKFISPNADGRYSEVCANRYTGELVIERKIMGTYNFASDAPDAMKDGKLPTTGEHDTLDVVPHNEYGGKYRHIAMGMTFGSISEGPVLLGTTEKKPSSSELISQIALCIPLVLFFGL